| Enzyme: | XcmI | Longest uncut segments |
| Specificity: | CCANNNNNNNNNTGG | Repeats in uncut segments |
| Number of sites: | 816463 | Genes in uncut segments |
| Mean distance between sites: | 3504 base pairs | |
| Standard deviation: | 4010 base pairs | |
| Site density | 285.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 501360 | chr15 | NT_037852.6 | 1394711-1896071 | 1.11 % in | 25 repeats | 0.60 % in | 1 genes |
| 2 | 412712 | chr6 | NT_167244.1 | 2350984-2763696 | 1.48 % in | 29 repeats | 0.00 % in | 0 genes |
| 3 | 214916 | chr6 | NT_167244.1 | 4384619-4599535 | 2.32 % in | 16 repeats | 0.00 % in | 0 genes |
| 4 | 194531 | chr6 | NT_167247.1 | 4410498-4605029 | 4.05 % in | 36 repeats | 95.49 % in | 3 genes |
| 5 | 193838 | chrY | NT_011875.12 | 8520708-8714546 | 74.11 % in | 13 repeats | 0.00 % in | 0 genes |
| 6 | 185611 | chr6 | NT_167244.1 | 3787765-3973376 | 1.63 % in | 17 repeats | 0.00 % in | 0 genes |
| 7 | 176151 | chr6 | NT_167244.1 | 3179564-3355715 | 0.26 % in | 6 repeats | 0.38 % in | 1 genes |
| 8 | 174602 | chr6 | NT_167249.1 | 2131612-2306214 | 4.17 % in | 30 repeats | 0.00 % in | 0 genes |
| 9 | 171877 | chr6 | NT_167247.1 | 1556070-1727947 | 2.74 % in | 24 repeats | 0.00 % in | 0 genes |
| 10 | 160196 | chr6 | NT_167248.1 | 521496-681692 | 0.55 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 158938 | chr6 | NT_167244.1 | 2005584-2164522 | 1.48 % in | 10 repeats | 0.00 % in | 0 genes |
| 12 | 152917 | chr6 | NT_167244.1 | 2885401-3038318 | 5.10 % in | 39 repeats | 0.00 % in | 0 genes |
| 13 | 152505 | chr9 | NT_008470.19 | 21692597-21845102 | 0.68 % in | 5 repeats | 0.00 % in | 0 genes |
| 14 | 126036 | chr6 | NT_167249.1 | 4720096-4846132 | 11.68 % in | 69 repeats | 0.00 % in | 0 genes |
| 15 | 121660 | chr6 | NT_167246.1 | 3253842-3375502 | 0.78 % in | 5 repeats | 0.00 % in | 0 genes |
| 16 | 118345 | chr10 | NT_008705.16 | 38712011-38830356 | 27.09 % in | 213 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 501360 | chr15 | NT_037852.6 | 1394711-1896071 | 25 | 19 | L2a (3) | MER44C (2) | L1MDa (2) | |
| 2 | 412712 | chr6 | NT_167244.1 | 2350984-2763696 | 29 | 20 | AluJb (4) | L1ME4a (3) | MLT2D (2) | |
| 3 | 214916 | chr6 | NT_167244.1 | 4384619-4599535 | 16 | 11 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 4 | 194531 | chr6 | NT_167247.1 | 4410498-4605029 | 36 | 26 | L2b (3) | AluSx (3) | MLT1J (2) | |
| 5 | 193838 | chrY | NT_011875.12 | 8520708-8714546 | 13 | 4 | LTR12B (10) | L1PA8A (1) | L1PA16 (1) | |
| 6 | 185611 | chr6 | NT_167244.1 | 3787765-3973376 | 17 | 14 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 7 | 176151 | chr6 | NT_167244.1 | 3179564-3355715 | 6 | 4 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 8 | 174602 | chr6 | NT_167249.1 | 2131612-2306214 | 30 | 15 | AluSx (6) | L1MB8 (3) | Charlie2b (3) | |
| 9 | 171877 | chr6 | NT_167247.1 | 1556070-1727947 | 24 | 19 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 10 | 160196 | chr6 | NT_167248.1 | 521496-681692 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 158938 | chr6 | NT_167244.1 | 2005584-2164522 | 10 | 6 | AluSx (4) | AluJb (2) | MIRb (1) | |
| 12 | 152917 | chr6 | NT_167244.1 | 2885401-3038318 | 39 | 22 | AluY (5) | L2a (3) | AluSx (3) | |
| 13 | 152505 | chr9 | NT_008470.19 | 21692597-21845102 | 5 | 4 | L2 (2) | MIR3 (1) | LTR67B (1) | |
| 14 | 126036 | chr6 | NT_167249.1 | 4720096-4846132 | 69 | 28 | AluSx (12) | AluY (8) | L2a (5) | |
| 15 | 121660 | chr6 | NT_167246.1 | 3253842-3375502 | 5 | 3 | MIRb (2) | AluSx (2) | MIR3 (1) | |
| 16 | 118345 | chr10 | NT_008705.16 | 38712011-38830356 | 213 | 28 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 501360 | chr15 | NT_037852.6 | 1394711-1896071 | LOC100418897 | |
| 4 | 194531 | chr6 | NT_167247.1 | 4410498-4605029 | COL11A2P | |
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| COL11A2 | collagen_alpha-2(XI)_chain_isoform_4_precursor | |||||
| 7 | 176151 | chr6 | NT_167244.1 | 3179564-3355715 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |