| Enzyme: | AloI | Longest uncut segments |
| Specificity: | GAACNNNNNNTCC | Repeats in uncut segments |
| Number of sites: | 243075 | Genes in uncut segments |
| Mean distance between sites: | 11771 base pairs | |
| Standard deviation: | 12424 base pairs | |
| Site density | 85.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490923 | chr15 | NT_037852.6 | 1398265-1889188 | 0.35 % in | 7 repeats | 0.00 % in | 0 genes |
| 2 | 411436 | chr6 | NT_167244.1 | 2357155-2768591 | 1.33 % in | 22 repeats | 0.00 % in | 0 genes |
| 3 | 212273 | chr7 | NT_023603.5 | 40272-252545 | 99.96 % in | 12 repeats | 0.00 % in | 0 genes |
| 4 | 204970 | chr6 | NT_167244.1 | 3155249-3360219 | 6.34 % in | 74 repeats | 13.81 % in | 3 genes |
| 5 | 200068 | chr7 | NT_077528.2 | 298820-498888 | 35.44 % in | 241 repeats | 0.00 % in | 0 genes |
| 6 | 198820 | chrY | NT_011875.12 | 8549724-8748544 | 72.31 % in | 74 repeats | 0.40 % in | 1 genes |
| 7 | 198246 | chr6 | NT_167244.1 | 3775165-3973411 | 3.34 % in | 33 repeats | 6.22 % in | 1 genes |
| 8 | 196983 | chr6 | NT_167248.1 | 518380-715363 | 10.60 % in | 47 repeats | 2.18 % in | 3 genes |
| 9 | 184520 | chr11 | NT_009237.18 | 48703286-48887806 | 85.16 % in | 51 repeats | 0.00 % in | 0 genes |
| 10 | 182887 | chr6 | NT_167247.1 | 4421825-4604712 | 2.61 % in | 24 repeats | 0.00 % in | 0 genes |
| 11 | 178257 | chr6 | NT_167247.1 | 1555918-1734175 | 4.46 % in | 37 repeats | 0.00 % in | 0 genes |
| 12 | 174807 | chr9 | NT_008470.19 | 21677396-21852203 | 6.54 % in | 43 repeats | 0.00 % in | 0 genes |
| 13 | 173170 | chr6 | NT_167249.1 | 2137246-2310416 | 3.25 % in | 27 repeats | 0.00 % in | 0 genes |
| 14 | 171976 | chr17 | NT_010783.15 | 22956664-23128640 | 42.86 % in | 352 repeats | 0.00 % in | 0 genes |
| 15 | 165622 | chr6 | NT_167244.1 | 1999076-2164698 | 2.10 % in | 18 repeats | 0.00 % in | 0 genes |
| 16 | 160954 | chr6 | NT_167244.1 | 2883265-3044219 | 7.25 % in | 59 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490923 | chr15 | NT_037852.6 | 1398265-1889188 | 7 | 5 | L2a (3) | (TA)n (1) | MLT1L (1) | |
| 2 | 411436 | chr6 | NT_167244.1 | 2357155-2768591 | 22 | 16 | AluY (3) | LTR84b (2) | L4 (2) | |
| 3 | 212273 | chr7 | NT_023603.5 | 40272-252545 | 12 | 5 | ALR/Alpha (7) | L1PA2 (2) | L1PA4 (1) | |
| 4 | 204970 | chr6 | NT_167244.1 | 3155249-3360219 | 74 | 36 | AluSx (8) | L1MC5 (6) | MIRb (5) | |
| 5 | 200068 | chr7 | NT_077528.2 | 298820-498888 | 241 | 54 | AT_rich (27) | (GAATG)n (20) | (CGAAT)n (18) | |
| 6 | 198820 | chrY | NT_011875.12 | 8549724-8748544 | 74 | 34 | LTR12B (9) | A-rich (9) | L1PA16 (7) | |
| 7 | 198246 | chr6 | NT_167244.1 | 3775165-3973411 | 33 | 22 | L2a (5) | MIR (3) | AT_rich (3) | |
| 8 | 196983 | chr6 | NT_167248.1 | 518380-715363 | 47 | 32 | AT_rich (7) | L2c (3) | L2b (3) | |
| 9 | 184520 | chr11 | NT_009237.18 | 48703286-48887806 | 51 | 24 | ALR/Alpha (14) | AT_rich (5) | L1PA2 (4) | |
| 10 | 182887 | chr6 | NT_167247.1 | 4421825-4604712 | 24 | 18 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 11 | 178257 | chr6 | NT_167247.1 | 1555918-1734175 | 37 | 29 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 12 | 174807 | chr9 | NT_008470.19 | 21677396-21852203 | 43 | 30 | MIRb (3) | L1M5 (3) | AluSq (3) | |
| 13 | 173170 | chr6 | NT_167249.1 | 2137246-2310416 | 27 | 14 | Charlie2b (6) | AluSx (4) | L1MB8 (3) | |
| 14 | 171976 | chr17 | NT_010783.15 | 22956664-23128640 | 352 | 90 | AluSx (41) | AluJo (29) | AT_rich (23) | |
| 15 | 165622 | chr6 | NT_167244.1 | 1999076-2164698 | 18 | 13 | AluSx (4) | FRAM (2) | AluJb (2) | |
| 16 | 160954 | chr6 | NT_167244.1 | 2883265-3044219 | 59 | 25 | AluY (7) | L1MC5 (6) | AluJo (5) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 204970 | chr6 | NT_167244.1 | 3155249-3360219 | SLC44A4 | choline_transporter-like_protein_4_isoform_3 |
| EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b | |||||
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 198820 | chrY | NT_011875.12 | 8549724-8748544 | ZNF884P | |
| 7 | 198246 | chr6 | NT_167244.1 | 3775165-3973411 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 8 | 196983 | chr6 | NT_167248.1 | 518380-715363 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||
| OR10C1 | olfactory_receptor_10C1 | |||||