| Enzyme: | ApaLI | Longest uncut segments |
| Specificity: | GTGCAC | Repeats in uncut segments |
| Number of sites: | 490478 | Genes in uncut segments |
| Mean distance between sites: | 5833 base pairs | |
| Standard deviation: | 6348 base pairs | |
| Site density | 171.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 506895 | chr15 | NT_037852.6 | 1391725-1898620 | 1.77 % in | 35 repeats | 1.09 % in | 1 genes |
| 2 | 418253 | chr6 | NT_167244.1 | 2354114-2772367 | 2.01 % in | 37 repeats | 0.00 % in | 0 genes |
| 3 | 265935 | chrY | NT_011875.12 | 8413146-8679081 | 80.15 % in | 25 repeats | 0.00 % in | 0 genes |
| 4 | 264239 | chr6 | NT_167244.1 | 2005363-2269602 | 4.20 % in | 51 repeats | 5.01 % in | 4 genes |
| 5 | 245332 | chr6 | NT_167244.1 | 3172337-3417669 | 4.43 % in | 58 repeats | 8.29 % in | 2 genes |
| 6 | 211309 | chr6 | NT_167244.1 | 4388443-4599752 | 1.38 % in | 12 repeats | 0.00 % in | 0 genes |
| 7 | 188467 | chr6 | NT_167248.1 | 504755-693222 | 12.39 % in | 27 repeats | 0.60 % in | 1 genes |
| 8 | 186114 | chr6 | NT_167244.1 | 3785464-3971578 | 1.25 % in | 13 repeats | 1.09 % in | 1 genes |
| 9 | 179789 | chr6 | NT_167249.1 | 2131494-2311283 | 5.47 % in | 46 repeats | 0.00 % in | 0 genes |
| 10 | 178097 | chr6 | NT_167247.1 | 4416556-4594653 | 0.64 % in | 7 repeats | 0.00 % in | 0 genes |
| 11 | 173009 | chr6 | NT_167247.1 | 1562903-1735912 | 3.26 % in | 19 repeats | 0.00 % in | 0 genes |
| 12 | 167468 | chr9 | NT_008470.19 | 21691286-21858754 | 3.83 % in | 24 repeats | 0.00 % in | 0 genes |
| 13 | 158168 | chr6 | NT_167244.1 | 2882674-3040842 | 7.49 % in | 59 repeats | 0.00 % in | 0 genes |
| 14 | 139245 | chr6 | NT_167246.1 | 3238292-3377537 | 8.37 % in | 60 repeats | 0.00 % in | 0 genes |
| 15 | 127581 | chr1 | NT_077389.3 | 263997-391578 | 99.17 % in | 57 repeats | 0.00 % in | 0 genes |
| 16 | 126463 | chrX | NT_011786.16 | 4272661-4399124 | 13.10 % in | 75 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 506895 | chr15 | NT_037852.6 | 1391725-1898620 | 35 | 23 | L1MDa (5) | L2a (3) | MER44C (2) | |
| 2 | 418253 | chr6 | NT_167244.1 | 2354114-2772367 | 37 | 22 | L4 (3) | L1ME4a (3) | AluY (3) | |
| 3 | 265935 | chrY | NT_011875.12 | 8413146-8679081 | 25 | 7 | LTR12B (15) | L1PA7 (3) | LTR12D (2) | |
| 4 | 264239 | chr6 | NT_167244.1 | 2005363-2269602 | 51 | 29 | AluSx (7) | MIR (5) | MIRb (3) | |
| 5 | 245332 | chr6 | NT_167244.1 | 3172337-3417669 | 58 | 26 | AluSx (10) | L1MC5 (4) | L1MB3 (4) | |
| 6 | 211309 | chr6 | NT_167244.1 | 4388443-4599752 | 12 | 10 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 7 | 188467 | chr6 | NT_167248.1 | 504755-693222 | 27 | 21 | AT_rich (4) | MER4D (2) | L1PA14 (2) | |
| 8 | 186114 | chr6 | NT_167244.1 | 3785464-3971578 | 13 | 11 | AT_rich (2) | AluJb (2) | MLT1H-int (1) | |
| 9 | 179789 | chr6 | NT_167249.1 | 2131494-2311283 | 46 | 23 | Charlie2b (6) | AluSx (6) | L1MB8 (3) | |
| 10 | 178097 | chr6 | NT_167247.1 | 4416556-4594653 | 7 | 7 | MIRb (1) | MIR (1) | MER11A (1) | |
| 11 | 173009 | chr6 | NT_167247.1 | 1562903-1735912 | 19 | 14 | MSTB (2) | MIR (2) | L1PB2 (2) | |
| 12 | 167468 | chr9 | NT_008470.19 | 21691286-21858754 | 24 | 19 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 13 | 158168 | chr6 | NT_167244.1 | 2882674-3040842 | 59 | 25 | AluY (7) | L1MC5 (6) | AluSx (5) | |
| 14 | 139245 | chr6 | NT_167246.1 | 3238292-3377537 | 60 | 32 | AluSx (13) | MIRb (3) | MIR (3) | |
| 15 | 127581 | chr1 | NT_077389.3 | 263997-391578 | 57 | 5 | ALR/Alpha (52) | MLT1J (2) | L2 (1) | |
| 16 | 126463 | chrX | NT_011786.16 | 4272661-4399124 | 75 | 23 | AluSx (15) | MER33 (14) | AluSc (13) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 506895 | chr15 | NT_037852.6 | 1391725-1898620 | LOC100418897 | |
| 4 | 264239 | chr6 | NT_167244.1 | 2005363-2269602 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| MUC21 | mucin-21_precursor | |||||
| 5 | 245332 | chr6 | NT_167244.1 | 3172337-3417669 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 188467 | chr6 | NT_167248.1 | 504755-693222 | OR12D1P | |
| 8 | 186114 | chr6 | NT_167244.1 | 3785464-3971578 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |