| Enzyme: | PlaDI | Longest uncut segments |
| Specificity: | CATCAG | Repeats in uncut segments |
| Number of sites: | 1648150 | Genes in uncut segments |
| Mean distance between sites: | 1736 base pairs | |
| Standard deviation: | 1847 base pairs | |
| Site density | 576.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 492782 | chr15 | NT_037852.6 | 1394229-1887011 | 0.42 % in | 11 repeats | 0.00 % in | 0 genes |
| 2 | 410039 | chr6 | NT_167244.1 | 2353332-2763371 | 1.23 % in | 21 repeats | 0.00 % in | 0 genes |
| 3 | 209369 | chr6 | NT_167244.1 | 4389259-4598628 | 0.69 % in | 8 repeats | 0.00 % in | 0 genes |
| 4 | 181928 | chr6 | NT_167244.1 | 3788951-3970879 | 0.45 % in | 6 repeats | 0.00 % in | 0 genes |
| 5 | 181793 | chr6 | NT_167244.1 | 3177173-3358966 | 1.79 % in | 22 repeats | 3.21 % in | 2 genes |
| 6 | 172595 | chr6 | NT_167247.1 | 4422035-4594630 | 0.22 % in | 2 repeats | 100.00 % in | 1 genes |
| 7 | 171929 | chr6 | NT_167249.1 | 2135428-2307357 | 3.27 % in | 25 repeats | 0.00 % in | 0 genes |
| 8 | 167131 | chr6 | NT_167247.1 | 1560952-1728083 | 1.02 % in | 7 repeats | 1.20 % in | 1 genes |
| 9 | 159747 | chr6 | NT_167248.1 | 521650-681397 | 0.27 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 157948 | chr6 | NT_167244.1 | 2007719-2165667 | 0.79 % in | 5 repeats | 0.00 % in | 0 genes |
| 11 | 151438 | chr9 | NT_008470.19 | 21692250-21843688 | 0.54 % in | 4 repeats | 0.00 % in | 0 genes |
| 12 | 147787 | chr6 | NT_167244.1 | 2890859-3038646 | 2.61 % in | 18 repeats | 0.00 % in | 0 genes |
| 13 | 119412 | chr6 | NT_167245.1 | 2604919-2724331 | 1.49 % in | 5 repeats | 0.00 % in | 0 genes |
| 14 | 116139 | chr6 | NT_167246.1 | 3259552-3375691 | 0.56 % in | 4 repeats | 0.00 % in | 0 genes |
| 15 | 113869 | chr6 | NT_167245.1 | 134326-248195 | 3.40 % in | 11 repeats | 0.00 % in | 0 genes |
| 16 | 110574 | chr6 | NT_167244.1 | 584424-694998 | 4.62 % in | 17 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 492782 | chr15 | NT_037852.6 | 1394229-1887011 | 11 | 10 | L1MDa (2) | MLT1L (1) | MIRc (1) | |
| 2 | 410039 | chr6 | NT_167244.1 | 2353332-2763371 | 21 | 14 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 209369 | chr6 | NT_167244.1 | 4389259-4598628 | 8 | 7 | MER57-int (2) | (TTCC)n (1) | L1MC (1) | |
| 4 | 181928 | chr6 | NT_167244.1 | 3788951-3970879 | 6 | 5 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 181793 | chr6 | NT_167244.1 | 3177173-3358966 | 22 | 14 | GC_rich (3) | AluSx (3) | MER44B (2) | |
| 6 | 172595 | chr6 | NT_167247.1 | 4422035-4594630 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 7 | 171929 | chr6 | NT_167249.1 | 2135428-2307357 | 25 | 12 | Charlie2b (6) | AluSx (5) | L1MB8 (3) | |
| 8 | 167131 | chr6 | NT_167247.1 | 1560952-1728083 | 7 | 6 | MIR (2) | MIRc (1) | L1MC3 (1) | |
| 9 | 159747 | chr6 | NT_167248.1 | 521650-681397 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 157948 | chr6 | NT_167244.1 | 2007719-2165667 | 5 | 4 | AluSx (2) | MIRb (1) | MIR (1) | |
| 11 | 151438 | chr9 | NT_008470.19 | 21692250-21843688 | 4 | 3 | LTR67B (2) | MIR3 (1) | L1M5 (1) | |
| 12 | 147787 | chr6 | NT_167244.1 | 2890859-3038646 | 18 | 12 | AluY (4) | AluJo (3) | L1MC5 (2) | |
| 13 | 119412 | chr6 | NT_167245.1 | 2604919-2724331 | 5 | 5 | MLT1E2 (1) | MER5B (1) | MER5A1 (1) | |
| 14 | 116139 | chr6 | NT_167246.1 | 3259552-3375691 | 4 | 3 | MIRb (2) | MIR3 (1) | AluSx (1) | |
| 15 | 113869 | chr6 | NT_167245.1 | 134326-248195 | 11 | 10 | L2c (2) | (TTTC)n (1) | tRNA-Ala-GCY_ (1) | |
| 16 | 110574 | chr6 | NT_167244.1 | 584424-694998 | 17 | 13 | L1MA9 (3) | L1M5 (3) | MIR (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 181793 | chr6 | NT_167244.1 | 3177173-3358966 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 172595 | chr6 | NT_167247.1 | 4422035-4594630 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 167131 | chr6 | NT_167247.1 | 1560952-1728083 | LOC100421582 | tripartite_motif-containing_protein_26 |