| Enzyme: | BcgI | Longest uncut segments |
| Specificity: | CGANNNNNNTGC | Repeats in uncut segments |
| Number of sites: | 320289 | Genes in uncut segments |
| Mean distance between sites: | 8933 base pairs | |
| Standard deviation: | 11966 base pairs | |
| Site density | 111.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 557889 | chr15 | NT_037852.6 | 1397326-1955215 | 5.40 % in | 123 repeats | 3.26 % in | 2 genes |
| 2 | 423271 | chr6 | NT_167244.1 | 2351962-2775233 | 2.70 % in | 52 repeats | 0.00 % in | 0 genes |
| 3 | 250740 | chr6 | NT_167244.1 | 2004845-2255585 | 2.06 % in | 24 repeats | 3.02 % in | 3 genes |
| 4 | 244816 | chr6 | NT_167244.1 | 3748790-3993606 | 13.62 % in | 105 repeats | 5.34 % in | 1 genes |
| 5 | 236144 | chr6 | NT_167244.1 | 4382189-4618333 | 8.11 % in | 54 repeats | 0.62 % in | 1 genes |
| 6 | 233303 | chr8 | NT_167187.1 | 31386743-31620046 | 99.26 % in | 76 repeats | 0.00 % in | 0 genes |
| 7 | 219778 | chr6 | NT_167248.1 | 496395-716173 | 16.03 % in | 73 repeats | 2.41 % in | 4 genes |
| 8 | 215426 | chr4 | NT_016354.19 | 25681604-25897030 | 51.17 % in | 313 repeats | 15.23 % in | 1 genes |
| 9 | 212746 | chr5 | NT_034772.6 | 11729661-11942407 | 50.41 % in | 318 repeats | 0.00 % in | 0 genes |
| 10 | 209654 | chr6 | NT_167247.1 | 4386355-4596009 | 7.99 % in | 43 repeats | 0.00 % in | 0 genes |
| 11 | 189348 | chrX | NT_011651.17 | 31353935-31543283 | 82.37 % in | 262 repeats | 0.00 % in | 0 genes |
| 12 | 187116 | chr4 | NT_016297.16 | 1945985-2133101 | 53.52 % in | 323 repeats | 0.00 % in | 0 genes |
| 13 | 186017 | chr13 | NT_024524.14 | 56087375-56273392 | 45.65 % in | 320 repeats | 0.00 % in | 0 genes |
| 14 | 183566 | chr4 | NT_016354.19 | 17105114-17288680 | 67.23 % in | 285 repeats | 0.00 % in | 0 genes |
| 15 | 183384 | chr6 | NT_007299.13 | 13397617-13581001 | 51.43 % in | 292 repeats | 0.00 % in | 0 genes |
| 16 | 181323 | chr6 | NT_167249.1 | 2126579-2307902 | 5.23 % in | 43 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 557889 | chr15 | NT_037852.6 | 1397326-1955215 | 123 | 60 | AT_rich (12) | AluJb (7) | L2a (6) | |
| 2 | 423271 | chr6 | NT_167244.1 | 2351962-2775233 | 52 | 31 | AluY (4) | AluJb (4) | L4 (3) | |
| 3 | 250740 | chr6 | NT_167244.1 | 2004845-2255585 | 24 | 17 | AluSx (4) | MIRb (2) | MIR (2) | |
| 4 | 244816 | chr6 | NT_167244.1 | 3748790-3993606 | 105 | 58 | L2a (11) | AT_rich (7) | L1M5 (5) | |
| 5 | 236144 | chr6 | NT_167244.1 | 4382189-4618333 | 54 | 30 | AluSx (7) | Harlequin-int (5) | AluY (5) | |
| 6 | 233303 | chr8 | NT_167187.1 | 31386743-31620046 | 76 | 22 | ALR/Alpha (39) | LTR14C (5) | AluY (5) | |
| 7 | 219778 | chr6 | NT_167248.1 | 496395-716173 | 73 | 54 | AT_rich (8) | L2c (3) | L2b (3) | |
| 8 | 215426 | chr4 | NT_016354.19 | 25681604-25897030 | 313 | 132 | AT_rich (26) | L2a (19) | MIRb (15) | |
| 9 | 212746 | chr5 | NT_034772.6 | 11729661-11942407 | 318 | 118 | AT_rich (44) | AluSx (14) | L1MEg (13) | |
| 10 | 209654 | chr6 | NT_167247.1 | 4386355-4596009 | 43 | 29 | L1PB1 (5) | MIR (3) | L2b (3) | |
| 11 | 189348 | chrX | NT_011651.17 | 31353935-31543283 | 262 | 118 | L1MA3 (13) | L1PB1 (9) | AT_rich (9) | |
| 12 | 187116 | chr4 | NT_016297.16 | 1945985-2133101 | 323 | 125 | AT_rich (44) | L2a (18) | (TA)n (13) | |
| 13 | 186017 | chr13 | NT_024524.14 | 56087375-56273392 | 320 | 141 | AT_rich (26) | MIRb (13) | L2c (13) | |
| 14 | 183566 | chr4 | NT_016354.19 | 17105114-17288680 | 285 | 126 | AT_rich (23) | MIR (8) | L1M5 (8) | |
| 15 | 183384 | chr6 | NT_007299.13 | 13397617-13581001 | 292 | 122 | AT_rich (35) | L2a (16) | MIRb (15) | |
| 16 | 181323 | chr6 | NT_167249.1 | 2126579-2307902 | 43 | 21 | Charlie2b (6) | AluSx (6) | MamGypLTR1b (3) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 557889 | chr15 | NT_037852.6 | 1397326-1955215 | LOC100418897 | |
| LOC646214 | p21_protein_(Cdc42/Rac)-activated_kinase_2_pseudogene | |||||
| 3 | 250740 | chr6 | NT_167244.1 | 2004845-2255585 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 4 | 244816 | chr6 | NT_167244.1 | 3748790-3993606 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 236144 | chr6 | NT_167244.1 | 4382189-4618333 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 7 | 219778 | chr6 | NT_167248.1 | 496395-716173 | OR2G1P | |
| OR12D1P | ||||||
| OR11A1 | olfactory_receptor_11A1 | |||||
| OR10C1 | olfactory_receptor_10C1 | |||||
| 8 | 215426 | chr4 | NT_016354.19 | 25681604-25897030 | EMCN | endomucin_isoform_2 |