| Enzyme: | NsiI | Longest uncut segments |
| Specificity: | ATGCAT | Repeats in uncut segments |
| Number of sites: | 922355 | Genes in uncut segments |
| Mean distance between sites: | 3102 base pairs | |
| Standard deviation: | 3580 base pairs | |
| Site density | 322.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 501121 | chr15 | NT_037852.6 | 1393646-1894767 | 1.33 % in | 27 repeats | 0.34 % in | 1 genes |
| 2 | 408559 | chr6 | NT_167244.1 | 2357402-2765961 | 0.90 % in | 16 repeats | 0.00 % in | 0 genes |
| 3 | 309393 | chrY | NT_011875.12 | 8417228-8726621 | 83.00 % in | 50 repeats | 0.26 % in | 1 genes |
| 4 | 246473 | chr6 | NT_167244.1 | 3172575-3419048 | 4.55 % in | 58 repeats | 8.16 % in | 2 genes |
| 5 | 224725 | chr6 | NT_167244.1 | 4389090-4613815 | 6.42 % in | 38 repeats | 0.00 % in | 0 genes |
| 6 | 188972 | chr6 | NT_167244.1 | 3782796-3971768 | 2.30 % in | 17 repeats | 2.48 % in | 1 genes |
| 7 | 182280 | chr6 | NT_167248.1 | 505316-687596 | 11.04 % in | 19 repeats | 0.00 % in | 0 genes |
| 8 | 178435 | chr6 | NT_167247.1 | 4420933-4599368 | 2.12 % in | 18 repeats | 100.00 % in | 1 genes |
| 9 | 172655 | chr7 | NT_023603.5 | 24402-197057 | 99.84 % in | 8 repeats | 0.00 % in | 0 genes |
| 10 | 167312 | chr6 | NT_167249.1 | 2137920-2305232 | 1.02 % in | 9 repeats | 0.00 % in | 0 genes |
| 11 | 165952 | chr6 | NT_167247.1 | 1562300-1728252 | 0.43 % in | 5 repeats | 0.00 % in | 0 genes |
| 12 | 156926 | chr6 | NT_167244.1 | 2008191-2165117 | 0.60 % in | 4 repeats | 0.00 % in | 0 genes |
| 13 | 154169 | chr6 | NT_167244.1 | 2887835-3042004 | 5.28 % in | 43 repeats | 0.00 % in | 0 genes |
| 14 | 153591 | chr9 | NT_008470.19 | 21693157-21846748 | 0.69 % in | 7 repeats | 0.00 % in | 0 genes |
| 15 | 150268 | chr6 | NT_167246.1 | 3255511-3405779 | 7.49 % in | 54 repeats | 0.00 % in | 0 genes |
| 16 | 125488 | chrX | NT_011786.16 | 4272992-4398480 | 12.52 % in | 72 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 501121 | chr15 | NT_037852.6 | 1393646-1894767 | 27 | 20 | L2a (3) | L1MDa (3) | MER44C (2) | |
| 2 | 408559 | chr6 | NT_167244.1 | 2357402-2765961 | 16 | 12 | LTR84b (2) | L4 (2) | AluY (2) | |
| 3 | 309393 | chrY | NT_011875.12 | 8417228-8726621 | 50 | 23 | LTR12B (17) | L1PA16 (6) | L1MA3 (4) | |
| 4 | 246473 | chr6 | NT_167244.1 | 3172575-3419048 | 58 | 25 | AluSx (10) | L1MC5 (4) | L1MB3 (4) | |
| 5 | 224725 | chr6 | NT_167244.1 | 4389090-4613815 | 38 | 20 | AluSx (6) | Harlequin-int (5) | HERVH-int (4) | |
| 6 | 188972 | chr6 | NT_167244.1 | 3782796-3971768 | 17 | 12 | L2a (3) | AT_rich (2) | AluSc (2) | |
| 7 | 182280 | chr6 | NT_167248.1 | 505316-687596 | 19 | 16 | MER4D (2) | L1PA14 (2) | L1M5 (2) | |
| 8 | 178435 | chr6 | NT_167247.1 | 4420933-4599368 | 18 | 14 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 9 | 172655 | chr7 | NT_023603.5 | 24402-197057 | 8 | 3 | L1PA2 (4) | ALR/Alpha (3) | AT_rich (1) | |
| 10 | 167312 | chr6 | NT_167249.1 | 2137920-2305232 | 9 | 5 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 11 | 165952 | chr6 | NT_167247.1 | 1562300-1728252 | 5 | 4 | MIR (2) | (GGAA)n (1) | A-rich (1) | |
| 12 | 156926 | chr6 | NT_167244.1 | 2008191-2165117 | 4 | 4 | MIRb (1) | MIR (1) | AluY (1) | |
| 13 | 154169 | chr6 | NT_167244.1 | 2887835-3042004 | 43 | 20 | L1MC5 (6) | AluY (6) | AluSc (4) | |
| 14 | 153591 | chr9 | NT_008470.19 | 21693157-21846748 | 7 | 6 | L2 (2) | MIRb (1) | MIR3 (1) | |
| 15 | 150268 | chr6 | NT_167246.1 | 3255511-3405779 | 54 | 28 | AluSx (7) | MIRb (4) | MIR (4) | |
| 16 | 125488 | chrX | NT_011786.16 | 4272992-4398480 | 72 | 22 | MER33 (14) | AluSx (13) | AluSc (13) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 501121 | chr15 | NT_037852.6 | 1393646-1894767 | LOC100418897 | |
| 3 | 309393 | chrY | NT_011875.12 | 8417228-8726621 | ZNF884P | |
| 4 | 246473 | chr6 | NT_167244.1 | 3172575-3419048 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 188972 | chr6 | NT_167244.1 | 3782796-3971768 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 8 | 178435 | chr6 | NT_167247.1 | 4420933-4599368 | LOC100507722 | hypothetical_protein_LOC100507722 |