| Enzyme: | BmgBIB | Longest uncut segments |
| Specificity: | CACGTC | Repeats in uncut segments |
| Number of sites: | 269177 | Genes in uncut segments |
| Mean distance between sites: | 10629 base pairs | |
| Standard deviation: | 12997 base pairs | |
| Site density | 94.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 501235 | chr15 | NT_037852.6 | 1397448-1898683 | 0.99 % in | 24 repeats | 1.12 % in | 1 genes |
| 2 | 441919 | chr6 | NT_167244.1 | 2329014-2770933 | 4.99 % in | 94 repeats | 1.28 % in | 1 genes |
| 3 | 257671 | chr6 | NT_167244.1 | 2003262-2260933 | 3.38 % in | 41 repeats | 3.55 % in | 3 genes |
| 4 | 215387 | chr6 | NT_167244.1 | 3779580-3994967 | 8.08 % in | 66 repeats | 3.67 % in | 1 genes |
| 5 | 212195 | chr6 | NT_167244.1 | 4387973-4600168 | 1.60 % in | 12 repeats | 0.00 % in | 0 genes |
| 6 | 191061 | chr6 | NT_167249.1 | 2115830-2306891 | 7.76 % in | 67 repeats | 0.00 % in | 0 genes |
| 7 | 190452 | chr2 | NT_022135.16 | 29792949-29983401 | 46.55 % in | 290 repeats | 0.00 % in | 0 genes |
| 8 | 189497 | chr10 | NT_030059.13 | 6263676-6453173 | 44.13 % in | 299 repeats | 45.48 % in | 1 genes |
| 9 | 179361 | chr6 | NT_167244.1 | 3178010-3357371 | 0.87 % in | 12 repeats | 0.00 % in | 0 genes |
| 10 | 177479 | chr7 | NT_007933.15 | 47735280-47912759 | 56.32 % in | 245 repeats | 0.00 % in | 0 genes |
| 11 | 174073 | chr6 | NT_167248.1 | 510216-684289 | 8.19 % in | 7 repeats | 0.00 % in | 0 genes |
| 12 | 173709 | chr6 | NT_167247.1 | 4421234-4594943 | 0.46 % in | 3 repeats | 0.00 % in | 0 genes |
| 13 | 173217 | chr10 | NT_030059.13 | 59845530-60018747 | 60.42 % in | 306 repeats | 0.00 % in | 0 genes |
| 14 | 171260 | chr6 | NT_167244.1 | 395492-566752 | 27.94 % in | 108 repeats | 0.00 % in | 0 genes |
| 15 | 169081 | chr6 | NT_167247.1 | 1559054-1728135 | 1.67 % in | 14 repeats | 0.00 % in | 0 genes |
| 16 | 166780 | chr8 | NT_008046.16 | 20391127-20557907 | 54.58 % in | 304 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 501235 | chr15 | NT_037852.6 | 1397448-1898683 | 24 | 18 | L2a (3) | MER44C (2) | L1MEf (2) | |
| 2 | 441919 | chr6 | NT_167244.1 | 2329014-2770933 | 94 | 46 | L1MC4a (7) | AluSx (7) | AluJb (7) | |
| 3 | 257671 | chr6 | NT_167244.1 | 2003262-2260933 | 41 | 25 | AluSx (5) | MIRb (3) | FRAM (3) | |
| 4 | 215387 | chr6 | NT_167244.1 | 3779580-3994967 | 66 | 44 | L2a (9) | L1P3 (3) | L1MEc (3) | |
| 5 | 212195 | chr6 | NT_167244.1 | 4387973-4600168 | 12 | 10 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 6 | 191061 | chr6 | NT_167249.1 | 2115830-2306891 | 67 | 36 | AluSx (10) | Charlie2b (5) | AluJb (5) | |
| 7 | 190452 | chr2 | NT_022135.16 | 29792949-29983401 | 290 | 120 | AT_rich (28) | AluSx (12) | MIRb (10) | |
| 8 | 189497 | chr10 | NT_030059.13 | 6263676-6453173 | 299 | 127 | AT_rich (25) | (TA)n (14) | AluY (12) | |
| 9 | 179361 | chr6 | NT_167244.1 | 3178010-3357371 | 12 | 9 | GC_rich (3) | AluSp (2) | LTR23 (1) | |
| 10 | 177479 | chr7 | NT_007933.15 | 47735280-47912759 | 245 | 108 | AT_rich (19) | L2c (13) | L2a (7) | |
| 11 | 174073 | chr6 | NT_167248.1 | 510216-684289 | 7 | 7 | LTR7 (1) | L1PREC2 (1) | L1PA7 (1) | |
| 12 | 173709 | chr6 | NT_167247.1 | 4421234-4594943 | 3 | 3 | MIR (1) | MER11A (1) | AluSc (1) | |
| 13 | 173217 | chr10 | NT_030059.13 | 59845530-60018747 | 306 | 121 | AT_rich (18) | MIR (17) | MIRb (12) | |
| 14 | 171260 | chr6 | NT_167244.1 | 395492-566752 | 108 | 62 | AT_rich (12) | MIRb (4) | AluSg/x (4) | |
| 15 | 169081 | chr6 | NT_167247.1 | 1559054-1728135 | 14 | 11 | Tigger7 (2) | MSTD (2) | MIR (2) | |
| 16 | 166780 | chr8 | NT_008046.16 | 20391127-20557907 | 304 | 124 | AT_rich (29) | L2c (15) | MIR (13) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 501235 | chr15 | NT_037852.6 | 1397448-1898683 | LOC100418897 | |
| 2 | 441919 | chr6 | NT_167244.1 | 2329014-2770933 | HCG22 | HLA_complex_group_22 |
| 3 | 257671 | chr6 | NT_167244.1 | 2003262-2260933 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 4 | 215387 | chr6 | NT_167244.1 | 3779580-3994967 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 8 | 189497 | chr10 | NT_030059.13 | 6263676-6453173 | MIR548F1 | microRNA_548f-1 |