| Enzyme: | R2.BsrDI | Longest uncut segments |
| Specificity: | GCAATG | Repeats in uncut segments |
| Number of sites: | 1413826 | Genes in uncut segments |
| Mean distance between sites: | 2023 base pairs | |
| Standard deviation: | 2077 base pairs | |
| Site density | 494.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 488514 | chr15 | NT_037852.6 | 1398227-1886741 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 404672 | chr6 | NT_167244.1 | 2358595-2763267 | 0.31 % in | 5 repeats | 0.00 % in | 0 genes |
| 3 | 210350 | chr6 | NT_167244.1 | 4388242-4598592 | 1.16 % in | 8 repeats | 0.00 % in | 0 genes |
| 4 | 181885 | chr6 | NT_167244.1 | 3790357-3972242 | 0.78 % in | 7 repeats | 0.00 % in | 0 genes |
| 5 | 177148 | chr6 | NT_167247.1 | 4420242-4597390 | 1.47 % in | 12 repeats | 100.00 % in | 1 genes |
| 6 | 175346 | chr6 | NT_167244.1 | 3180100-3355446 | 0.13 % in | 3 repeats | 0.07 % in | 1 genes |
| 7 | 172655 | chr6 | NT_167247.1 | 1554932-1727587 | 2.72 % in | 23 repeats | 4.65 % in | 1 genes |
| 8 | 167496 | chr6 | NT_167249.1 | 2137917-2305413 | 1.13 % in | 9 repeats | 0.00 % in | 0 genes |
| 9 | 161485 | chr6 | NT_167244.1 | 2005917-2167402 | 1.73 % in | 14 repeats | 0.00 % in | 0 genes |
| 10 | 160277 | chr6 | NT_167248.1 | 521312-681589 | 0.60 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 153990 | chr9 | NT_008470.19 | 21689731-21843721 | 1.81 % in | 8 repeats | 0.00 % in | 0 genes |
| 12 | 143361 | chr6 | NT_167244.1 | 2894368-3037729 | 0.23 % in | 4 repeats | 0.00 % in | 0 genes |
| 13 | 124389 | chrX | NT_011786.16 | 4267037-4391426 | 10.20 % in | 72 repeats | 0.00 % in | 0 genes |
| 14 | 124362 | chr6 | NT_167245.1 | 2600187-2724549 | 4.54 % in | 15 repeats | 0.00 % in | 0 genes |
| 15 | 118330 | chr6 | NT_167247.1 | 1175890-1294220 | 1.50 % in | 2 repeats | 0.00 % in | 0 genes |
| 16 | 116819 | chr6 | NT_167246.1 | 3259241-3376060 | 0.73 % in | 6 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 488514 | chr15 | NT_037852.6 | 1398227-1886741 | 1 | 1 | AT_rich (1) | |||
| 2 | 404672 | chr6 | NT_167244.1 | 2358595-2763267 | 5 | 4 | AluJb (2) | L4 (1) | L1MEg (1) | |
| 3 | 210350 | chr6 | NT_167244.1 | 4388242-4598592 | 8 | 7 | MER57-int (2) | (TTCC)n (1) | L1MC (1) | |
| 4 | 181885 | chr6 | NT_167244.1 | 3790357-3972242 | 7 | 6 | MLT1H-int (2) | MLT1H (1) | MER52D (1) | |
| 5 | 177148 | chr6 | NT_167247.1 | 4420242-4597390 | 12 | 11 | MLT1J (2) | (TTAAA)n (1) | MIR (1) | |
| 6 | 175346 | chr6 | NT_167244.1 | 3180100-3355446 | 3 | 3 | GC_rich (1) | (CCG)n (1) | AluSp (1) | |
| 7 | 172655 | chr6 | NT_167247.1 | 1554932-1727587 | 23 | 19 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 8 | 167496 | chr6 | NT_167249.1 | 2137917-2305413 | 9 | 5 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 9 | 161485 | chr6 | NT_167244.1 | 2005917-2167402 | 14 | 10 | AluSx (4) | AluJb (2) | MIRb (1) | |
| 10 | 160277 | chr6 | NT_167248.1 | 521312-681589 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 153990 | chr9 | NT_008470.19 | 21689731-21843721 | 8 | 6 | LTR67B (2) | L1M4b (2) | MSTA (1) | |
| 12 | 143361 | chr6 | NT_167244.1 | 2894368-3037729 | 4 | 4 | L1MC5 (1) | AluY (1) | AluSg1 (1) | |
| 13 | 124389 | chrX | NT_011786.16 | 4267037-4391426 | 72 | 20 | AluSx (15) | MER33 (14) | AluSc (13) | |
| 14 | 124362 | chr6 | NT_167245.1 | 2600187-2724549 | 15 | 12 | MLT1N2 (2) | MER21C (2) | L2 (2) | |
| 15 | 118330 | chr6 | NT_167247.1 | 1175890-1294220 | 2 | 1 | ERV3-16A3_I-int (2) | |||
| 16 | 116819 | chr6 | NT_167246.1 | 3259241-3376060 | 6 | 5 | MIRb (2) | MIR3 (1) | L2a (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 177148 | chr6 | NT_167247.1 | 4420242-4597390 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 6 | 175346 | chr6 | NT_167244.1 | 3180100-3355446 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 172655 | chr6 | NT_167247.1 | 1554932-1727587 | LOC100421582 | tripartite_motif-containing_protein_26 |