| Enzyme: | NheI | Longest uncut segments |
| Specificity: | GCTAGC | Repeats in uncut segments |
| Number of sites: | 281049 | Genes in uncut segments |
| Mean distance between sites: | 10180 base pairs | |
| Standard deviation: | 11291 base pairs | |
| Site density | 98.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 520777 | chr15 | NT_037852.6 | 1385377-1906154 | 3.38 % in | 58 repeats | 1.92 % in | 1 genes |
| 2 | 441596 | chr6 | NT_167244.1 | 2345219-2786815 | 5.04 % in | 91 repeats | 1.42 % in | 1 genes |
| 3 | 257057 | chr6 | NT_167244.1 | 2008967-2266024 | 3.21 % in | 39 repeats | 2.99 % in | 3 genes |
| 4 | 250512 | chr6 | NT_167244.1 | 4352103-4602615 | 9.95 % in | 55 repeats | 7.92 % in | 2 genes |
| 5 | 223543 | chr6 | NT_167244.1 | 3140303-3363846 | 9.18 % in | 110 repeats | 20.28 % in | 4 genes |
| 6 | 221249 | chr6 | NT_167244.1 | 3766627-3987876 | 8.59 % in | 72 repeats | 5.90 % in | 1 genes |
| 7 | 213870 | chr6 | NT_167246.1 | 3168607-3382477 | 9.75 % in | 100 repeats | 15.76 % in | 4 genes |
| 8 | 204922 | chr6 | NT_167247.1 | 4402157-4607079 | 7.11 % in | 45 repeats | 92.68 % in | 3 genes |
| 9 | 204753 | chr7 | NT_023603.5 | 32821-237574 | 99.97 % in | 11 repeats | 0.00 % in | 0 genes |
| 10 | 192489 | chr6 | NT_167249.1 | 4665743-4858232 | 29.73 % in | 271 repeats | 0.00 % in | 0 genes |
| 11 | 181716 | chr6 | NT_167249.1 | 2133546-2315262 | 6.02 % in | 51 repeats | 0.00 % in | 0 genes |
| 12 | 178863 | chr6 | NT_167244.1 | 2885727-3064590 | 8.31 % in | 79 repeats | 0.00 % in | 0 genes |
| 13 | 173459 | chr6 | NT_167247.1 | 1559865-1733324 | 2.70 % in | 20 repeats | 0.00 % in | 0 genes |
| 14 | 166237 | chr6 | NT_167248.1 | 517732-683969 | 4.17 % in | 2 repeats | 0.00 % in | 0 genes |
| 15 | 161033 | chr12 | NT_029419.12 | 38067-199100 | 81.79 % in | 219 repeats | 0.00 % in | 0 genes |
| 16 | 155913 | chr19 | NT_011109.16 | 28260532-28416445 | 52.27 % in | 427 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 520777 | chr15 | NT_037852.6 | 1385377-1906154 | 58 | 36 | L1MDa (6) | AT_rich (5) | Tigger2 (3) | |
| 2 | 441596 | chr6 | NT_167244.1 | 2345219-2786815 | 91 | 49 | AluY (7) | AluJb (5) | AT_rich (4) | |
| 3 | 257057 | chr6 | NT_167244.1 | 2008967-2266024 | 39 | 25 | MIR (5) | MIRb (3) | L1MEe (3) | |
| 4 | 250512 | chr6 | NT_167244.1 | 4352103-4602615 | 55 | 34 | HUERS-P3-int (7) | L1PB1 (4) | MER57-int (3) | |
| 5 | 223543 | chr6 | NT_167244.1 | 3140303-3363846 | 110 | 41 | AluSx (14) | MIR (8) | L1MC5 (8) | |
| 6 | 221249 | chr6 | NT_167244.1 | 3766627-3987876 | 72 | 47 | L2a (9) | L1M5 (5) | AT_rich (4) | |
| 7 | 213870 | chr6 | NT_167246.1 | 3168607-3382477 | 100 | 45 | AluSx (18) | AT_rich (5) | AluSg (5) | |
| 8 | 204922 | chr6 | NT_167247.1 | 4402157-4607079 | 45 | 30 | L1PB1 (4) | L2b (3) | AluSx (3) | |
| 9 | 204753 | chr7 | NT_023603.5 | 32821-237574 | 11 | 4 | ALR/Alpha (5) | L1PA2 (4) | L1PA3 (1) | |
| 10 | 192489 | chr6 | NT_167249.1 | 4665743-4858232 | 271 | 69 | AluSx (28) | AluJb (19) | AluY (17) | |
| 11 | 181716 | chr6 | NT_167249.1 | 2133546-2315262 | 51 | 28 | Charlie2b (6) | AluSx (6) | L1MB8 (3) | |
| 12 | 178863 | chr6 | NT_167244.1 | 2885727-3064590 | 79 | 36 | AluY (7) | AluJb (7) | L1MC5 (6) | |
| 13 | 173459 | chr6 | NT_167247.1 | 1559865-1733324 | 20 | 15 | Tigger7 (2) | MSTB (2) | MIR (2) | |
| 14 | 166237 | chr6 | NT_167248.1 | 517732-683969 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 15 | 161033 | chr12 | NT_029419.12 | 38067-199100 | 219 | 80 | AluSx (33) | SST1 (10) | AluJb (10) | |
| 16 | 155913 | chr19 | NT_011109.16 | 28260532-28416445 | 427 | 100 | AluSx (40) | AluJo (34) | MIR (29) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 520777 | chr15 | NT_037852.6 | 1385377-1906154 | LOC100418897 | |
| 2 | 441596 | chr6 | NT_167244.1 | 2345219-2786815 | MICB | MHC_class_I_polypeptide-related_sequence_B_precursor |
| 3 | 257057 | chr6 | NT_167244.1 | 2008967-2266024 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| MUC21 | mucin-21_precursor | |||||
| 4 | 250512 | chr6 | NT_167244.1 | 4352103-4602615 | COL11A2P | |
| HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) | |||||
| 5 | 223543 | chr6 | NT_167244.1 | 3140303-3363846 | NEU1 | sialidase-1_precursor |
| SLC44A4 | choline_transporter-like_protein_4_isoform_3 | |||||
| EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b | |||||
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 221249 | chr6 | NT_167244.1 | 3766627-3987876 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 7 | 213870 | chr6 | NT_167246.1 | 3168607-3382477 | NEU1 | sialidase-1_precursor |
| C2 | complement_C2_isoform_3 | |||||
| CFB | complement_factor_B_preproprotein_preproprotein | |||||
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 8 | 204922 | chr6 | NT_167247.1 | 4402157-4607079 | COL11A2P | |
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| COL11A2 | collagen_alpha-2(XI)_chain_isoform_4_precursor | |||||