| Enzyme: | LlaCI | Longest uncut segments |
| Specificity: | AAGCTT | Repeats in uncut segments |
| Number of sites: | 837343 | Genes in uncut segments |
| Mean distance between sites: | 3417 base pairs | |
| Standard deviation: | 3640 base pairs | |
| Site density | 292.6 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 500697 | chr15 | NT_037852.6 | 1393200-1893897 | 1.42 % in | 27 repeats | 0.16 % in | 1 genes |
| 2 | 407587 | chr6 | NT_167244.1 | 2355352-2762939 | 0.93 % in | 18 repeats | 0.00 % in | 0 genes |
| 3 | 210612 | chr6 | NT_167244.1 | 4389158-4599770 | 1.05 % in | 12 repeats | 0.00 % in | 0 genes |
| 4 | 195013 | chr6 | NT_167244.1 | 3786209-3981222 | 3.85 % in | 32 repeats | 0.66 % in | 1 genes |
| 5 | 180367 | chr6 | NT_167244.1 | 3178369-3358736 | 1.25 % in | 12 repeats | 2.44 % in | 2 genes |
| 6 | 179380 | chr6 | NT_167247.1 | 1549978-1729358 | 4.61 % in | 42 repeats | 7.23 % in | 1 genes |
| 7 | 179335 | chr6 | NT_167247.1 | 4418903-4598238 | 1.98 % in | 16 repeats | 100.00 % in | 1 genes |
| 8 | 177089 | chr6 | NT_167244.1 | 2867370-3044459 | 11.38 % in | 103 repeats | 6.15 % in | 4 genes |
| 9 | 175300 | chr6 | NT_167249.1 | 2127964-2303264 | 3.37 % in | 25 repeats | 0.00 % in | 0 genes |
| 10 | 164726 | chr6 | NT_167248.1 | 518020-682746 | 3.29 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 163734 | chr9 | NT_008470.19 | 21686268-21850002 | 4.21 % in | 24 repeats | 0.00 % in | 0 genes |
| 12 | 157046 | chr6 | NT_167244.1 | 2009295-2166341 | 0.03 % in | 1 repeats | 0.00 % in | 0 genes |
| 13 | 150818 | chrY | NT_011875.12 | 8480867-8631685 | 66.80 % in | 6 repeats | 0.00 % in | 0 genes |
| 14 | 129481 | chr6 | NT_167249.1 | 3363080-3492561 | 18.14 % in | 114 repeats | 0.00 % in | 0 genes |
| 15 | 128883 | chr6 | NT_167245.1 | 2598286-2727169 | 7.15 % in | 22 repeats | 0.00 % in | 0 genes |
| 16 | 128439 | chr6 | NT_167246.1 | 3258374-3386813 | 4.28 % in | 26 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 500697 | chr15 | NT_037852.6 | 1393200-1893897 | 27 | 20 | L2a (3) | L1MDa (3) | MER44C (2) | |
| 2 | 407587 | chr6 | NT_167244.1 | 2355352-2762939 | 18 | 11 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 210612 | chr6 | NT_167244.1 | 4389158-4599770 | 12 | 10 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 195013 | chr6 | NT_167244.1 | 3786209-3981222 | 32 | 24 | L2a (6) | MLT1H-int (2) | L1M5 (2) | |
| 5 | 180367 | chr6 | NT_167244.1 | 3178369-3358736 | 12 | 8 | GC_rich (3) | L2c (2) | AluSp (2) | |
| 6 | 179380 | chr6 | NT_167247.1 | 1549978-1729358 | 42 | 27 | MIRc (3) | MIR3 (3) | L2c (3) | |
| 7 | 179335 | chr6 | NT_167247.1 | 4418903-4598238 | 16 | 14 | MLT1J (2) | AluSx (2) | (TTAAA)n (1) | |
| 8 | 177089 | chr6 | NT_167244.1 | 2867370-3044459 | 103 | 34 | AluSx (14) | AluJo (12) | AluY (8) | |
| 9 | 175300 | chr6 | NT_167249.1 | 2127964-2303264 | 25 | 15 | MamGypLTR1b (3) | AluJo (3) | MLT2B1 (2) | |
| 10 | 164726 | chr6 | NT_167248.1 | 518020-682746 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 163734 | chr9 | NT_008470.19 | 21686268-21850002 | 24 | 16 | MIRb (2) | MER5B (2) | LTR67B (2) | |
| 12 | 157046 | chr6 | NT_167244.1 | 2009295-2166341 | 1 | 1 | MIRb (1) | |||
| 13 | 150818 | chrY | NT_011875.12 | 8480867-8631685 | 6 | 2 | LTR12B (5) | LTR12D (1) | ||
| 14 | 129481 | chr6 | NT_167249.1 | 3363080-3492561 | 114 | 43 | AluSx (20) | L2a (7) | AluY (7) | |
| 15 | 128883 | chr6 | NT_167245.1 | 2598286-2727169 | 22 | 18 | Tigger1 (2) | MLT1N2 (2) | MER21C (2) | |
| 16 | 128439 | chr6 | NT_167246.1 | 3258374-3386813 | 26 | 18 | AluSx (4) | L1MC5 (3) | MIRb (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 500697 | chr15 | NT_037852.6 | 1393200-1893897 | LOC100418897 | |
| 4 | 195013 | chr6 | NT_167244.1 | 3786209-3981222 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 180367 | chr6 | NT_167244.1 | 3178369-3358736 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 179380 | chr6 | NT_167247.1 | 1549978-1729358 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 7 | 179335 | chr6 | NT_167247.1 | 4418903-4598238 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 177089 | chr6 | NT_167244.1 | 2867370-3044459 | LST1 | leukocyte-specific_transcript_1_protein_isoform_5 |
| NCR3 | natural_cytotoxicity_triggering_receptor_3_isoform_c | |||||
| UQCRHP1 | ||||||
| MSH5 | mutS_protein_homolog_5_isoform_c | |||||