| Enzyme: | PciI | Longest uncut segments |
| Specificity: | ACATGT | Repeats in uncut segments |
| Number of sites: | 1058509 | Genes in uncut segments |
| Mean distance between sites: | 2703 base pairs | |
| Standard deviation: | 3084 base pairs | |
| Site density | 369.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 493323 | chr15 | NT_037852.6 | 1393242-1886565 | 0.60 % in | 11 repeats | 0.00 % in | 0 genes |
| 2 | 406181 | chr6 | NT_167244.1 | 2357452-2763633 | 0.57 % in | 10 repeats | 0.00 % in | 0 genes |
| 3 | 257568 | chr6 | NT_167244.1 | 2004996-2262564 | 3.61 % in | 42 repeats | 2.88 % in | 3 genes |
| 4 | 214366 | chr6 | NT_167244.1 | 4384859-4599225 | 2.31 % in | 16 repeats | 0.00 % in | 0 genes |
| 5 | 186002 | chr6 | NT_167244.1 | 3787092-3973094 | 1.48 % in | 16 repeats | 0.21 % in | 1 genes |
| 6 | 178849 | chr6 | NT_167244.1 | 3177388-3356237 | 0.80 % in | 14 repeats | 1.62 % in | 2 genes |
| 7 | 176866 | chr6 | NT_167249.1 | 2131070-2307936 | 4.96 % in | 37 repeats | 0.00 % in | 0 genes |
| 8 | 174870 | chr6 | NT_167247.1 | 4420229-4595099 | 0.79 % in | 6 repeats | 100.00 % in | 1 genes |
| 9 | 166895 | chr6 | NT_167247.1 | 1562248-1729143 | 0.61 % in | 7 repeats | 0.00 % in | 0 genes |
| 10 | 165795 | chr6 | NT_167248.1 | 520519-686314 | 3.46 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 165422 | chr9 | NT_008470.19 | 21693281-21858703 | 3.08 % in | 20 repeats | 0.00 % in | 0 genes |
| 12 | 148760 | chr6 | NT_167244.1 | 2891576-3040336 | 3.20 % in | 24 repeats | 0.00 % in | 0 genes |
| 13 | 127375 | chr1 | NT_077389.3 | 264218-391593 | 99.34 % in | 57 repeats | 0.00 % in | 0 genes |
| 14 | 125542 | chr6 | NT_167245.1 | 2603414-2728956 | 4.43 % in | 18 repeats | 0.00 % in | 0 genes |
| 15 | 125327 | chr1 | NT_004350.19 | 2058146-2183473 | 4.59 % in | 13 repeats | 0.00 % in | 0 genes |
| 16 | 124486 | chr10 | NT_008705.16 | 38710070-38834556 | 27.54 % in | 225 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 493323 | chr15 | NT_037852.6 | 1393242-1886565 | 11 | 9 | L1MDa (3) | MIRc (1) | MIRb (1) | |
| 2 | 406181 | chr6 | NT_167244.1 | 2357452-2763633 | 10 | 8 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 257568 | chr6 | NT_167244.1 | 2004996-2262564 | 42 | 25 | AluSx (5) | MIRb (3) | L1MEe (3) | |
| 4 | 214366 | chr6 | NT_167244.1 | 4384859-4599225 | 16 | 11 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 5 | 186002 | chr6 | NT_167244.1 | 3787092-3973094 | 16 | 13 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 6 | 178849 | chr6 | NT_167244.1 | 3177388-3356237 | 14 | 11 | GC_rich (3) | LTR23 (2) | MER66C (1) | |
| 7 | 176866 | chr6 | NT_167249.1 | 2131070-2307936 | 37 | 19 | Charlie2b (6) | AluSx (6) | L1MB8 (3) | |
| 8 | 174870 | chr6 | NT_167247.1 | 4420229-4595099 | 6 | 6 | MIR (1) | MER11A (1) | L2b (1) | |
| 9 | 166895 | chr6 | NT_167247.1 | 1562248-1729143 | 7 | 5 | MIR (2) | L1MEe (2) | (GGAA)n (1) | |
| 10 | 165795 | chr6 | NT_167248.1 | 520519-686314 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 165422 | chr9 | NT_008470.19 | 21693281-21858703 | 20 | 16 | MIRb (2) | L2 (2) | HAL1 (2) | |
| 12 | 148760 | chr6 | NT_167244.1 | 2891576-3040336 | 24 | 13 | L1MC5 (6) | AluY (3) | AluSc (3) | |
| 13 | 127375 | chr1 | NT_077389.3 | 264218-391593 | 57 | 5 | ALR/Alpha (52) | MLT1J (2) | L2 (1) | |
| 14 | 125542 | chr6 | NT_167245.1 | 2603414-2728956 | 18 | 15 | Tigger1 (2) | MLT1N2 (2) | L2 (2) | |
| 15 | 125327 | chr1 | NT_004350.19 | 2058146-2183473 | 13 | 9 | L1MB3 (4) | AluSg (2) | MIR (1) | |
| 16 | 124486 | chr10 | NT_008705.16 | 38710070-38834556 | 225 | 36 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 257568 | chr6 | NT_167244.1 | 2004996-2262564 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 5 | 186002 | chr6 | NT_167244.1 | 3787092-3973094 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 178849 | chr6 | NT_167244.1 | 3177388-3356237 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 8 | 174870 | chr6 | NT_167247.1 | 4420229-4595099 | LOC100507722 | hypothetical_protein_LOC100507722 |