| Enzyme: | RpaBI | Longest uncut segments |
| Specificity: | CCCGCAG | Repeats in uncut segments |
| Number of sites: | 92417 | Genes in uncut segments |
| Mean distance between sites: | 30961 base pairs | |
| Standard deviation: | 55857 base pairs | |
| Site density | 32.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 933814 | chr6 | NT_007299.13 | 7363348-8297162 | 39.55 % in | 1359 repeats | 80.90 % in | 2 genes |
| 2 | 919323 | chr2 | NT_022135.16 | 35381528-36300851 | 38.55 % in | 1320 repeats | 39.34 % in | 3 genes |
| 3 | 892060 | chr13 | NT_024524.14 | 45376887-46268947 | 50.71 % in | 1412 repeats | 0.19 % in | 3 genes |
| 4 | 882623 | chr21 | NT_011512.11 | 5952995-6835618 | 50.21 % in | 1463 repeats | 3.38 % in | 7 genes |
| 5 | 848348 | chr4 | NT_016297.16 | 819658-1668006 | 51.04 % in | 1377 repeats | 0.05 % in | 1 genes |
| 6 | 841751 | chr6 | NT_025741.15 | 6215664-7057415 | 46.66 % in | 1301 repeats | 56.04 % in | 1 genes |
| 7 | 786649 | chr13 | NT_024524.14 | 40931256-41717905 | 45.37 % in | 1264 repeats | 63.33 % in | 1 genes |
| 8 | 777791 | chr12 | NT_029419.12 | 35683990-36461781 | 60.64 % in | 1213 repeats | 0.06 % in | 1 genes |
| 9 | 766404 | chr4 | NT_016354.19 | 40068582-40834986 | 43.38 % in | 1120 repeats | 0.00 % in | 0 genes |
| 10 | 766266 | chr7 | NT_007933.15 | 17979801-18746067 | 41.67 % in | 1208 repeats | 0.00 % in | 0 genes |
| 11 | 749793 | chr5 | NT_006713.15 | 35060517-35810310 | 57.64 % in | 1143 repeats | 0.00 % in | 0 genes |
| 12 | 731782 | chr1 | NT_032977.9 | 30570880-31302662 | 57.37 % in | 1422 repeats | 0.00 % in | 0 genes |
| 13 | 719433 | chr9 | NT_008413.18 | 25015830-25735263 | 52.00 % in | 1132 repeats | 0.00 % in | 0 genes |
| 14 | 715889 | chr11 | NT_033899.8 | 7596993-8312882 | 49.73 % in | 1276 repeats | 0.00 % in | 0 genes |
| 15 | 706680 | chrX | NT_011669.17 | 4148946-4855626 | 79.11 % in | 1056 repeats | 0.00 % in | 0 genes |
| 16 | 701486 | chr2 | NT_005403.17 | 76116895-76818381 | 42.49 % in | 1138 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 933814 | chr6 | NT_007299.13 | 7363348-8297162 | 1359 | 283 | AT_rich (166) | L2a (67) | MIRb (65) | |
| 2 | 919323 | chr2 | NT_022135.16 | 35381528-36300851 | 1320 | 291 | AT_rich (159) | L2a (68) | MIR (53) | |
| 3 | 892060 | chr13 | NT_024524.14 | 45376887-46268947 | 1412 | 328 | AT_rich (172) | (TA)n (43) | L2a (42) | |
| 4 | 882623 | chr21 | NT_011512.11 | 5952995-6835618 | 1463 | 334 | AT_rich (185) | AluSx (41) | AluY (34) | |
| 5 | 848348 | chr4 | NT_016297.16 | 819658-1668006 | 1377 | 325 | AT_rich (166) | MIR (55) | L2a (39) | |
| 6 | 841751 | chr6 | NT_025741.15 | 6215664-7057415 | 1301 | 288 | AT_rich (182) | MIR (44) | L2a (43) | |
| 7 | 786649 | chr13 | NT_024524.14 | 40931256-41717905 | 1264 | 270 | AT_rich (83) | L2a (66) | MIRb (53) | |
| 8 | 777791 | chr12 | NT_029419.12 | 35683990-36461781 | 1213 | 309 | AT_rich (130) | L2a (45) | (TA)n (40) | |
| 9 | 766404 | chr4 | NT_016354.19 | 40068582-40834986 | 1120 | 251 | AT_rich (142) | L2a (59) | MIR (44) | |
| 10 | 766266 | chr7 | NT_007933.15 | 17979801-18746067 | 1208 | 267 | AT_rich (104) | AluY (70) | MIR (54) | |
| 11 | 749793 | chr5 | NT_006713.15 | 35060517-35810310 | 1143 | 285 | AT_rich (151) | (TA)n (38) | MIR (36) | |
| 12 | 731782 | chr1 | NT_032977.9 | 30570880-31302662 | 1422 | 273 | MIRb (150) | L2c (95) | MIR (94) | |
| 13 | 719433 | chr9 | NT_008413.18 | 25015830-25735263 | 1132 | 271 | AT_rich (130) | MIR (53) | MIRb (44) | |
| 14 | 715889 | chr11 | NT_033899.8 | 7596993-8312882 | 1276 | 296 | AT_rich (108) | MIRb (54) | MIR (54) | |
| 15 | 706680 | chrX | NT_011669.17 | 4148946-4855626 | 1056 | 228 | MIRb (62) | MIR (54) | L2a (38) | |
| 16 | 701486 | chr2 | NT_005403.17 | 76116895-76818381 | 1138 | 261 | AT_rich (87) | L2a (53) | MIRb (49) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 933814 | chr6 | NT_007299.13 | 7363348-8297162 | LOC728052 | hypothetical_LOC728052 |
| BAI3 | brain-specific_angiogenesis_inhibitor_3_precursor | |||||
| 2 | 919323 | chr2 | NT_022135.16 | 35381528-36300851 | SGCEP | hypothetical_LOC401014 |
| LOC100505498 | hypothetical_LOC100505498,_transcript_variant_2 | |||||
| RPL6P5 | ||||||
| 3 | 892060 | chr13 | NT_024524.14 | 45376887-46268947 | LOC100507505 | hypothetical_protein_LOC100507505 |
| OR7E104P | ||||||
| NFYAP1 | ||||||
| 4 | 882623 | chr21 | NT_011512.11 | 5952995-6835618 | LOC100505973 | hypothetical_LOC100505973 |
| SLC6A6P1 | ||||||
| RPL37P4 | ||||||
| LOC100128057 | ||||||
| LOC100421082 | ||||||
| LOC100288151 | ||||||
| C1QBPP | ||||||
| 5 | 848348 | chr4 | NT_016297.16 | 819658-1668006 | RPL31P31 | |
| 6 | 841751 | chr6 | NT_025741.15 | 6215664-7057415 | LOC100418924 | glutamate_receptor,_ionotropic_kainate_2_isoform_2_precursor |
| 7 | 786649 | chr13 | NT_024524.14 | 40931256-41717905 | DIAPH3 | protein_diaphanous_homolog_3_isoform_b |
| 8 | 777791 | chr12 | NT_029419.12 | 35683990-36461781 | RPL31P48 | |