| Enzyme: | SmlI | Longest uncut segments |
| Specificity: | CTYRAG | Repeats in uncut segments |
| Number of sites: | 2701116 | Genes in uncut segments |
| Mean distance between sites: | 1059 base pairs | |
| Standard deviation: | 1112 base pairs | |
| Site density | 944.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 488951 | chr15 | NT_037852.6 | 1397203-1886154 | 0.14 % in | 5 repeats | 0.00 % in | 0 genes |
| 2 | 403563 | chr6 | NT_167244.1 | 2359198-2762761 | 0.17 % in | 3 repeats | 0.00 % in | 0 genes |
| 3 | 208032 | chr6 | NT_167244.1 | 4389921-4597953 | 0.08 % in | 2 repeats | 0.00 % in | 0 genes |
| 4 | 185630 | chr6 | NT_167244.1 | 3788055-3973685 | 1.77 % in | 18 repeats | 0.00 % in | 0 genes |
| 5 | 181164 | chr6 | NT_167244.1 | 3179180-3360344 | 1.45 % in | 15 repeats | 2.87 % in | 2 genes |
| 6 | 174884 | chr6 | NT_167247.1 | 4421002-4595886 | 0.88 % in | 7 repeats | 100.00 % in | 1 genes |
| 7 | 167014 | chr6 | NT_167249.1 | 2137112-2304126 | 1.00 % in | 9 repeats | 0.00 % in | 0 genes |
| 8 | 165722 | chr6 | NT_167247.1 | 1561536-1727258 | 0.43 % in | 3 repeats | 0.85 % in | 1 genes |
| 9 | 162492 | chr6 | NT_167248.1 | 519493-681985 | 1.96 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 156457 | chr6 | NT_167244.1 | 2008865-2165322 | 0.18 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 152788 | chr9 | NT_008470.19 | 21690884-21843672 | 1.06 % in | 7 repeats | 0.00 % in | 0 genes |
| 12 | 145666 | chr6 | NT_167244.1 | 2892056-3037722 | 1.26 % in | 10 repeats | 0.00 % in | 0 genes |
| 13 | 119161 | chr6 | NT_167245.1 | 2605818-2724979 | 1.36 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 116135 | chr6 | NT_167247.1 | 1177593-1293728 | 0.06 % in | 1 repeats | 0.00 % in | 0 genes |
| 15 | 113706 | chr6 | NT_167246.1 | 3261336-3375042 | 0.28 % in | 2 repeats | 0.00 % in | 0 genes |
| 16 | 109364 | chr6 | NT_167245.1 | 137504-246868 | 1.30 % in | 4 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 488951 | chr15 | NT_037852.6 | 1397203-1886154 | 5 | 5 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 403563 | chr6 | NT_167244.1 | 2359198-2762761 | 3 | 3 | L4 (1) | L1MEg (1) | AluSp (1) | |
| 3 | 208032 | chr6 | NT_167244.1 | 4389921-4597953 | 2 | 2 | AluSg/x (1) | AluJo (1) | ||
| 4 | 185630 | chr6 | NT_167244.1 | 3788055-3973685 | 18 | 15 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 5 | 181164 | chr6 | NT_167244.1 | 3179180-3360344 | 15 | 8 | GC_rich (3) | AluSx (3) | MIRb (2) | |
| 6 | 174884 | chr6 | NT_167247.1 | 4421002-4595886 | 7 | 7 | (TTAAA)n (1) | MIR (1) | MER11A (1) | |
| 7 | 167014 | chr6 | NT_167249.1 | 2137112-2304126 | 9 | 5 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 8 | 165722 | chr6 | NT_167247.1 | 1561536-1727258 | 3 | 3 | MIR (1) | L1MC3 (1) | A-rich (1) | |
| 9 | 162492 | chr6 | NT_167248.1 | 519493-681985 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 156457 | chr6 | NT_167244.1 | 2008865-2165322 | 2 | 2 | MIRb (1) | MIR (1) | ||
| 11 | 152788 | chr9 | NT_008470.19 | 21690884-21843672 | 7 | 6 | LTR67B (2) | MSTA (1) | MIR3 (1) | |
| 12 | 145666 | chr6 | NT_167244.1 | 2892056-3037722 | 10 | 9 | AluY (2) | (TG)n (1) | (TCC)n (1) | |
| 13 | 119161 | chr6 | NT_167245.1 | 2605818-2724979 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 14 | 116135 | chr6 | NT_167247.1 | 1177593-1293728 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 15 | 113706 | chr6 | NT_167246.1 | 3261336-3375042 | 2 | 2 | MIRb (1) | AluSx (1) | ||
| 16 | 109364 | chr6 | NT_167245.1 | 137504-246868 | 4 | 4 | MLT1F (1) | MLT1E2 (1) | LTR12C (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 181164 | chr6 | NT_167244.1 | 3179180-3360344 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 174884 | chr6 | NT_167247.1 | 4421002-4595886 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 165722 | chr6 | NT_167247.1 | 1561536-1727258 | LOC100421582 | tripartite_motif-containing_protein_26 |