| Enzyme: | RspRSI | Longest uncut segments |
| Specificity: | GCCNNNNNGGC | Repeats in uncut segments |
| Number of sites: | 524132 | Genes in uncut segments |
| Mean distance between sites: | 5459 base pairs | |
| Standard deviation: | 7941 base pairs | |
| Site density | 183.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 510703 | chr15 | NT_037852.6 | 1394860-1905563 | 1.56 % in | 40 repeats | 1.95 % in | 1 genes |
| 2 | 402205 | chr6 | NT_167244.1 | 2359513-2761718 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 317433 | chrY | NT_011875.12 | 8406789-8724222 | 81.99 % in | 56 repeats | 0.25 % in | 1 genes |
| 4 | 209134 | chr6 | NT_167244.1 | 4389911-4599045 | 0.58 % in | 6 repeats | 0.00 % in | 0 genes |
| 5 | 196453 | chr7 | NT_077528.2 | 1-196454 | 74.23 % in | 35 repeats | 0.00 % in | 0 genes |
| 6 | 194745 | chr11 | NT_167190.1 | 20244-214989 | 99.85 % in | 55 repeats | 0.00 % in | 0 genes |
| 7 | 187891 | chr6 | NT_167247.1 | 1557102-1744993 | 7.96 % in | 56 repeats | 3.11 % in | 1 genes |
| 8 | 184800 | chr4 | NT_006316.16 | 372935-557735 | 9.61 % in | 84 repeats | 19.48 % in | 23 genes |
| 9 | 181098 | chr6 | NT_167244.1 | 3790075-3971173 | 0.39 % in | 4 repeats | 0.00 % in | 0 genes |
| 10 | 178777 | chr6 | NT_167249.1 | 2125378-2304155 | 4.19 % in | 36 repeats | 0.00 % in | 0 genes |
| 11 | 178680 | chr7 | NT_077528.2 | 196454-375134 | 64.72 % in | 76 repeats | 0.00 % in | 0 genes |
| 12 | 175064 | chr6 | NT_167244.1 | 3180232-3355296 | 0.02 % in | 2 repeats | 0.00 % in | 0 genes |
| 13 | 172377 | chr6 | NT_167247.1 | 4421877-4594254 | 0.00 % in | 1 repeats | 0.00 % in | 0 genes |
| 14 | 169123 | chr6 | NT_167248.1 | 519563-688686 | 4.17 % in | 5 repeats | 0.00 % in | 0 genes |
| 15 | 166629 | chr3 | NT_005612.16 | 16101798-16268427 | 54.10 % in | 271 repeats | 0.00 % in | 0 genes |
| 16 | 156602 | chr6 | NT_167244.1 | 2009910-2166512 | 0.09 % in | 1 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 510703 | chr15 | NT_037852.6 | 1394860-1905563 | 40 | 27 | AT_rich (5) | (TA)n (3) | L2a (3) | |
| 2 | 402205 | chr6 | NT_167244.1 | 2359513-2761718 | 1 | 1 | AluSp (1) | |||
| 3 | 317433 | chrY | NT_011875.12 | 8406789-8724222 | 56 | 23 | LTR12B (17) | L1PA16 (6) | AT_rich (4) | |
| 4 | 209134 | chr6 | NT_167244.1 | 4389911-4599045 | 6 | 5 | AluSx (2) | L1ME3D (1) | L1MC (1) | |
| 5 | 196453 | chr7 | NT_077528.2 | 1-196454 | 35 | 9 | ALR/Alpha (19) | L1PA4 (3) | L1PA2 (3) | |
| 6 | 194745 | chr11 | NT_167190.1 | 20244-214989 | 55 | 7 | ALR/Alpha (33) | L1PA4 (5) | L1PA3 (5) | |
| 7 | 187891 | chr6 | NT_167247.1 | 1557102-1744993 | 56 | 33 | L1MEf (6) | L1PB2 (4) | L2c (3) | |
| 8 | 184800 | chr4 | NT_006316.16 | 372935-557735 | 84 | 27 | (CA)n (48) | L1M4 (7) | AT_rich (3) | |
| 9 | 181098 | chr6 | NT_167244.1 | 3790075-3971173 | 4 | 4 | MLT1H-int (1) | MER52D (1) | AluSc (1) | |
| 10 | 178777 | chr6 | NT_167249.1 | 2125378-2304155 | 36 | 18 | AluSx (7) | MamGypLTR1b (3) | L1MB8 (3) | |
| 11 | 178680 | chr7 | NT_077528.2 | 196454-375134 | 76 | 34 | ALR/Alpha (16) | AT_rich (10) | L1PA2 (5) | |
| 12 | 175064 | chr6 | NT_167244.1 | 3180232-3355296 | 2 | 2 | GC_rich (1) | AluSp (1) | ||
| 13 | 172377 | chr6 | NT_167247.1 | 4421877-4594254 | 1 | 1 | AluSc (1) | |||
| 14 | 169123 | chr6 | NT_167248.1 | 519563-688686 | 5 | 4 | AT_rich (2) | L1PREC2 (1) | HERVH-int (1) | |
| 15 | 166629 | chr3 | NT_005612.16 | 16101798-16268427 | 271 | 104 | AT_rich (27) | MIRb (13) | AluSx (12) | |
| 16 | 156602 | chr6 | NT_167244.1 | 2009910-2166512 | 1 | 1 | MER5A1 (1) | |||
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 510703 | chr15 | NT_037852.6 | 1394860-1905563 | LOC100418897 | |
| 3 | 317433 | chrY | NT_011875.12 | 8406789-8724222 | ZNF884P | |
| 7 | 187891 | chr6 | NT_167247.1 | 1557102-1744993 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 8 | 184800 | chr4 | NT_006316.16 | 372935-557735 | LOC100287144 | ubiquitin_carboxyl-terminal_hydrolase_17-like |
| LOC100287178 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC100287205 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC100287238 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC100287270 | ||||||
| LOC100288520 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC100287302 | ||||||
| LOC100287327 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC100287364 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC100287404 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC100287441 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC100287478 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC100287513 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC728369 | ubiquitin_carboxyl-terminal_hydrolase_17 | |||||
| LOC728373 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC728379 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| USP17L5 | ubiquitin_specific_peptidase_17-like_5 | |||||
| LOC728393 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC728400 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| LOC728405 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| USP17 | ubiquitin_carboxyl-terminal_hydrolase_17 | |||||
| LOC728419 | ubiquitin_carboxyl-terminal_hydrolase_17-like | |||||
| USP17L6P | ubiquitin_specific_peptidase_17-like_6_(pseudogene) | |||||