| Enzyme: | ApoI | Longest uncut segments |
| Specificity: | RAATTY | Repeats in uncut segments |
| Number of sites: | 6220571 | Genes in uncut segments |
| Mean distance between sites: | 459 base pairs | |
| Standard deviation: | 592 base pairs | |
| Site density | 2174.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 401765 | chr6 | NT_167244.1 | 2359643-2761408 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 208433 | chr6 | NT_167244.1 | 4389562-4597995 | 0.27 % in | 4 repeats | 0.00 % in | 0 genes |
| 3 | 180740 | chr6 | NT_167244.1 | 3789912-3970652 | 0.18 % in | 3 repeats | 0.00 % in | 0 genes |
| 4 | 177924 | chr6 | NT_167244.1 | 3179104-3357028 | 0.42 % in | 7 repeats | 1.10 % in | 2 genes |
| 5 | 172858 | chr6 | NT_167247.1 | 4421551-4594409 | 0.09 % in | 2 repeats | 100.00 % in | 1 genes |
| 6 | 165388 | chr6 | NT_167249.1 | 2138278-2303666 | 0.27 % in | 5 repeats | 0.00 % in | 0 genes |
| 7 | 164646 | chr6 | NT_167247.1 | 1562414-1727060 | 0.02 % in | 1 repeats | 0.33 % in | 1 genes |
| 8 | 160914 | chr6 | NT_167248.1 | 521066-681980 | 1.00 % in | 2 repeats | 0.00 % in | 0 genes |
| 9 | 157267 | chr6 | NT_167244.1 | 2008493-2165760 | 0.41 % in | 4 repeats | 0.00 % in | 0 genes |
| 10 | 150178 | chr9 | NT_008470.19 | 21693150-21843328 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 11 | 145700 | chr6 | NT_167244.1 | 2891979-3037679 | 1.29 % in | 9 repeats | 0.00 % in | 0 genes |
| 12 | 118699 | chr6 | NT_167245.1 | 2605329-2724028 | 0.99 % in | 3 repeats | 0.00 % in | 0 genes |
| 13 | 117251 | chr6 | NT_167247.1 | 1176380-1293631 | 1.10 % in | 1 repeats | 0.00 % in | 0 genes |
| 14 | 108729 | chr6 | NT_167245.1 | 137291-246020 | 0.76 % in | 2 repeats | 0.00 % in | 0 genes |
| 15 | 108394 | chr6 | NT_167244.1 | 1832967-1941361 | 1.63 % in | 8 repeats | 0.00 % in | 0 genes |
| 16 | 105509 | chr6 | NT_167244.1 | 1451035-1556544 | 0.73 % in | 3 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 401765 | chr6 | NT_167244.1 | 2359643-2761408 | 1 | 1 | AluSp (1) | |||
| 2 | 208433 | chr6 | NT_167244.1 | 4389562-4597995 | 4 | 4 | (TTCC)n (1) | MER57-int (1) | AluSg/x (1) | |
| 3 | 180740 | chr6 | NT_167244.1 | 3789912-3970652 | 3 | 3 | MLT1H-int (1) | MER52D (1) | AluJb (1) | |
| 4 | 177924 | chr6 | NT_167244.1 | 3179104-3357028 | 7 | 5 | GC_rich (3) | Charlie4a (1) | (CCG)n (1) | |
| 5 | 172858 | chr6 | NT_167247.1 | 4421551-4594409 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 6 | 165388 | chr6 | NT_167249.1 | 2138278-2303666 | 5 | 3 | L1MB8 (2) | AluSx (2) | AT_rich (1) | |
| 7 | 164646 | chr6 | NT_167247.1 | 1562414-1727060 | 1 | 1 | A-rich (1) | |||
| 8 | 160914 | chr6 | NT_167248.1 | 521066-681980 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 9 | 157267 | chr6 | NT_167244.1 | 2008493-2165760 | 4 | 4 | MIRb (1) | MIR (1) | AluY (1) | |
| 10 | 150178 | chr9 | NT_008470.19 | 21693150-21843328 | 1 | 1 | L1M5 (1) | |||
| 11 | 145700 | chr6 | NT_167244.1 | 2891979-3037679 | 9 | 8 | AluY (2) | (TG)n (1) | (TCC)n (1) | |
| 12 | 118699 | chr6 | NT_167245.1 | 2605329-2724028 | 3 | 3 | MLT1E2 (1) | L2a (1) | L2 (1) | |
| 13 | 117251 | chr6 | NT_167247.1 | 1176380-1293631 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 14 | 108729 | chr6 | NT_167245.1 | 137291-246020 | 2 | 2 | MLT1E2 (1) | LTR12C (1) | ||
| 15 | 108394 | chr6 | NT_167244.1 | 1832967-1941361 | 8 | 7 | AluSx (2) | (TATG)n (1) | MIR (1) | |
| 16 | 105509 | chr6 | NT_167244.1 | 1451035-1556544 | 3 | 3 | ERV3-16A3_I-int (1) | AluY (1) | AluSg1 (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 177924 | chr6 | NT_167244.1 | 3179104-3357028 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 5 | 172858 | chr6 | NT_167247.1 | 4421551-4594409 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 164646 | chr6 | NT_167247.1 | 1562414-1727060 | LOC100421582 | tripartite_motif-containing_protein_26 |