| Enzyme: | TspGWI | Longest uncut segments |
| Specificity: | ACGGA | Repeats in uncut segments |
| Number of sites: | 994136 | Genes in uncut segments |
| Mean distance between sites: | 2878 base pairs | |
| Standard deviation: | 3333 base pairs | |
| Site density | 347.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490468 | chr15 | NT_037852.6 | 1398150-1888618 | 0.23 % in | 6 repeats | 0.00 % in | 0 genes |
| 2 | 404337 | chr6 | NT_167244.1 | 2359452-2763789 | 0.12 % in | 2 repeats | 0.00 % in | 0 genes |
| 3 | 210506 | chr6 | NT_167244.1 | 4389533-4600039 | 0.87 % in | 11 repeats | 0.00 % in | 0 genes |
| 4 | 182926 | chr6 | NT_167244.1 | 3787887-3970813 | 0.58 % in | 7 repeats | 0.00 % in | 0 genes |
| 5 | 180555 | chr6 | NT_167247.1 | 1561002-1741557 | 6.03 % in | 36 repeats | 1.08 % in | 1 genes |
| 6 | 177253 | chr6 | NT_167244.1 | 3179984-3357237 | 0.53 % in | 8 repeats | 0.73 % in | 2 genes |
| 7 | 174632 | chr6 | NT_167247.1 | 4421976-4596608 | 1.07 % in | 6 repeats | 100.00 % in | 1 genes |
| 8 | 169186 | chr6 | NT_167248.1 | 521561-690747 | 3.11 % in | 8 repeats | 0.67 % in | 1 genes |
| 9 | 165601 | chr6 | NT_167249.1 | 2137730-2303331 | 0.22 % in | 4 repeats | 0.00 % in | 0 genes |
| 10 | 157608 | chr6 | NT_167244.1 | 2007908-2165516 | 0.77 % in | 5 repeats | 0.00 % in | 0 genes |
| 11 | 156024 | chr9 | NT_008470.19 | 21692565-21848589 | 1.40 % in | 10 repeats | 0.00 % in | 0 genes |
| 12 | 150232 | chr6 | NT_167244.1 | 2889278-3039510 | 4.00 % in | 30 repeats | 0.00 % in | 0 genes |
| 13 | 120835 | chr6 | NT_167245.1 | 2605231-2726066 | 2.32 % in | 5 repeats | 0.00 % in | 0 genes |
| 14 | 120428 | chr6 | NT_167246.1 | 3259303-3379731 | 2.21 % in | 16 repeats | 0.00 % in | 0 genes |
| 15 | 115357 | chr6 | NT_167244.1 | 3485060-3600417 | 5.93 % in | 22 repeats | 0.00 % in | 0 genes |
| 16 | 115120 | chr6 | NT_167247.1 | 1177330-1292450 | 0.29 % in | 1 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490468 | chr15 | NT_037852.6 | 1398150-1888618 | 6 | 5 | L2a (2) | (TA)n (1) | MLT1L (1) | |
| 2 | 404337 | chr6 | NT_167244.1 | 2359452-2763789 | 2 | 2 | L1MEg (1) | AluSp (1) | ||
| 3 | 210506 | chr6 | NT_167244.1 | 4389533-4600039 | 11 | 10 | AluSx (2) | (TTCC)n (1) | MER57-int (1) | |
| 4 | 182926 | chr6 | NT_167244.1 | 3787887-3970813 | 7 | 6 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 180555 | chr6 | NT_167247.1 | 1561002-1741557 | 36 | 23 | L1PB2 (4) | L1MEf (3) | MSTB (2) | |
| 6 | 177253 | chr6 | NT_167244.1 | 3179984-3357237 | 8 | 6 | GC_rich (2) | AluSp (2) | L2c (1) | |
| 7 | 174632 | chr6 | NT_167247.1 | 4421976-4596608 | 6 | 6 | (TTAAA)n (1) | MLT1J (1) | MER11A (1) | |
| 8 | 169186 | chr6 | NT_167248.1 | 521561-690747 | 8 | 5 | AT_rich (4) | MLT1G3 (1) | L1PREC2 (1) | |
| 9 | 165601 | chr6 | NT_167249.1 | 2137730-2303331 | 4 | 4 | L1MC4a (1) | L1MB8 (1) | AT_rich (1) | |
| 10 | 157608 | chr6 | NT_167244.1 | 2007908-2165516 | 5 | 4 | AluSx (2) | MIRb (1) | MIR (1) | |
| 11 | 156024 | chr9 | NT_008470.19 | 21692565-21848589 | 10 | 8 | MIRb (2) | L2 (2) | MLT1A (1) | |
| 12 | 150232 | chr6 | NT_167244.1 | 2889278-3039510 | 30 | 16 | L1MC5 (4) | AluY (4) | AluSc (3) | |
| 13 | 120835 | chr6 | NT_167245.1 | 2605231-2726066 | 5 | 4 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 14 | 120428 | chr6 | NT_167246.1 | 3259303-3379731 | 16 | 11 | L1MC5 (3) | AluSx (3) | MIRb (2) | |
| 15 | 115357 | chr6 | NT_167244.1 | 3485060-3600417 | 22 | 14 | L1M2 (4) | AluSx (3) | AluSg (3) | |
| 16 | 115120 | chr6 | NT_167247.1 | 1177330-1292450 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 180555 | chr6 | NT_167247.1 | 1561002-1741557 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 6 | 177253 | chr6 | NT_167244.1 | 3179984-3357237 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 174632 | chr6 | NT_167247.1 | 4421976-4596608 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 169186 | chr6 | NT_167248.1 | 521561-690747 | OR12D1P | |