| Enzyme: | CspCI | Longest uncut segments |
| Specificity: | CAANNNNNGTGG | Repeats in uncut segments |
| Number of sites: | 429470 | Genes in uncut segments |
| Mean distance between sites: | 6662 base pairs | |
| Standard deviation: | 6799 base pairs | |
| Site density | 150.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 509466 | chr15 | NT_037852.6 | 1395530-1904996 | 1.40 % in | 39 repeats | 1.96 % in | 1 genes |
| 2 | 409761 | chr6 | NT_167244.1 | 2354931-2764692 | 1.05 % in | 20 repeats | 0.00 % in | 0 genes |
| 3 | 255915 | chrY | NT_011875.12 | 8413218-8669133 | 79.39 % in | 23 repeats | 0.00 % in | 0 genes |
| 4 | 213312 | chr6 | NT_167244.1 | 4384757-4598069 | 1.84 % in | 11 repeats | 0.00 % in | 0 genes |
| 5 | 198437 | chr6 | NT_167244.1 | 3773563-3972000 | 3.05 % in | 29 repeats | 6.58 % in | 1 genes |
| 6 | 188920 | chr6 | NT_167248.1 | 519250-708170 | 9.25 % in | 37 repeats | 1.78 % in | 2 genes |
| 7 | 184426 | chr6 | NT_167247.1 | 1557893-1742319 | 7.25 % in | 48 repeats | 2.74 % in | 1 genes |
| 8 | 182361 | chr6 | NT_167244.1 | 3176922-3359283 | 2.00 % in | 27 repeats | 3.51 % in | 2 genes |
| 9 | 175320 | chr6 | NT_167247.1 | 4420550-4595870 | 1.07 % in | 9 repeats | 0.00 % in | 0 genes |
| 10 | 172104 | chr6 | NT_167244.1 | 1996437-2168541 | 3.33 % in | 28 repeats | 0.00 % in | 0 genes |
| 11 | 168740 | chr6 | NT_167249.1 | 2134821-2303561 | 1.44 % in | 12 repeats | 0.00 % in | 0 genes |
| 12 | 165990 | chr4 | NT_006316.16 | 389440-555430 | 4.83 % in | 62 repeats | 0.00 % in | 0 genes |
| 13 | 158827 | chr6 | NT_167244.1 | 2894006-3052833 | 3.06 % in | 28 repeats | 0.00 % in | 0 genes |
| 14 | 154502 | chr9 | NT_008470.19 | 21692328-21846830 | 1.09 % in | 9 repeats | 0.00 % in | 0 genes |
| 15 | 132157 | chr1 | NT_077389.3 | 258917-391074 | 97.17 % in | 65 repeats | 0.00 % in | 0 genes |
| 16 | 128863 | chr1 | NT_004350.19 | 2045875-2174738 | 4.61 % in | 19 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 509466 | chr15 | NT_037852.6 | 1395530-1904996 | 39 | 26 | AT_rich (5) | (TA)n (3) | L2a (3) | |
| 2 | 409761 | chr6 | NT_167244.1 | 2354931-2764692 | 20 | 13 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 255915 | chrY | NT_011875.12 | 8413218-8669133 | 23 | 7 | LTR12B (13) | L1PA7 (3) | LTR12D (2) | |
| 4 | 213312 | chr6 | NT_167244.1 | 4384757-4598069 | 11 | 8 | MER57-int (3) | AluY (2) | (TTTTA)n (1) | |
| 5 | 198437 | chr6 | NT_167244.1 | 3773563-3972000 | 29 | 20 | MIR (3) | L2a (3) | AT_rich (3) | |
| 6 | 188920 | chr6 | NT_167248.1 | 519250-708170 | 37 | 24 | AT_rich (6) | L2c (3) | L2b (3) | |
| 7 | 184426 | chr6 | NT_167247.1 | 1557893-1742319 | 48 | 30 | L1PB2 (4) | L1MEf (4) | Tigger7 (2) | |
| 8 | 182361 | chr6 | NT_167244.1 | 3176922-3359283 | 27 | 17 | AluSx (5) | GC_rich (3) | MER44B (2) | |
| 9 | 175320 | chr6 | NT_167247.1 | 4420550-4595870 | 9 | 9 | (TTAAA)n (1) | MIR (1) | MER11A (1) | |
| 10 | 172104 | chr6 | NT_167244.1 | 1996437-2168541 | 28 | 20 | AluSx (4) | MIR (2) | FRAM (2) | |
| 11 | 168740 | chr6 | NT_167249.1 | 2134821-2303561 | 12 | 9 | MLT1A (2) | AluSx (2) | AluJb (2) | |
| 12 | 165990 | chr4 | NT_006316.16 | 389440-555430 | 62 | 9 | (CA)n (47) | L1M4 (7) | L1PA10 (2) | |
| 13 | 158827 | chr6 | NT_167244.1 | 2894006-3052833 | 28 | 15 | L1MC5 (6) | AluSc (4) | L2c (3) | |
| 14 | 154502 | chr9 | NT_008470.19 | 21692328-21846830 | 9 | 7 | LTR67B (2) | L2 (2) | MIRb (1) | |
| 15 | 132157 | chr1 | NT_077389.3 | 258917-391074 | 65 | 12 | ALR/Alpha (52) | MLT1J (2) | L1MB1 (2) | |
| 16 | 128863 | chr1 | NT_004350.19 | 2045875-2174738 | 19 | 13 | L1MEf (4) | MER4A1 (2) | LTR27 (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 509466 | chr15 | NT_037852.6 | 1395530-1904996 | LOC100418897 | |
| 5 | 198437 | chr6 | NT_167244.1 | 3773563-3972000 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 188920 | chr6 | NT_167248.1 | 519250-708170 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||
| 7 | 184426 | chr6 | NT_167247.1 | 1557893-1742319 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 8 | 182361 | chr6 | NT_167244.1 | 3176922-3359283 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||