| Enzyme: | SfiI | Longest uncut segments |
| Specificity: | GGCCNNNNNGGCC | Repeats in uncut segments |
| Number of sites: | 46571 | Genes in uncut segments |
| Mean distance between sites: | 61440 base pairs | |
| Standard deviation: | 99839 base pairs | |
| Site density | 16.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 1534704 | chr12 | NT_029419.12 | 43944331-45479035 | 51.04 % in | 2528 repeats | 47.93 % in | 6 genes |
| 2 | 1476973 | chr4 | NT_016354.19 | 42257564-43734537 | 53.83 % in | 2215 repeats | 15.55 % in | 5 genes |
| 3 | 1399993 | chr4 | NT_016354.19 | 37546338-38946331 | 44.23 % in | 2537 repeats | 68.52 % in | 17 genes |
| 4 | 1323009 | chr20 | NT_011387.8 | 6730149-8053158 | 48.70 % in | 2129 repeats | 7.47 % in | 4 genes |
| 5 | 1315452 | chr14 | NT_026437.12 | 43623365-44938817 | 53.73 % in | 2044 repeats | 44.62 % in | 6 genes |
| 6 | 1286944 | chr2 | NT_005403.17 | 35272984-36559928 | 52.30 % in | 1983 repeats | 26.56 % in | 2 genes |
| 7 | 1242806 | chr13 | NT_024524.14 | 38230435-39473241 | 48.70 % in | 1844 repeats | 9.22 % in | 9 genes |
| 8 | 1232976 | chr10 | NT_030059.13 | 8652871-9885847 | 54.43 % in | 1955 repeats | 0.31 % in | 1 genes |
| 9 | 1189084 | chr3 | NT_005612.16 | 10768163-11957247 | 46.84 % in | 1879 repeats | 0.00 % in | 0 genes |
| 10 | 1182277 | chr2 | NT_022184.15 | 34720671-35902948 | 49.46 % in | 1776 repeats | 0.00 % in | 0 genes |
| 11 | 1177650 | chr12 | NT_029419.12 | 22939058-24116708 | 60.51 % in | 1880 repeats | 0.00 % in | 0 genes |
| 12 | 1134488 | chr4 | NT_016297.16 | 3415699-4550187 | 54.81 % in | 1858 repeats | 0.00 % in | 0 genes |
| 13 | 1122040 | chr13 | NT_024524.14 | 49262169-50384209 | 50.13 % in | 1808 repeats | 0.00 % in | 0 genes |
| 14 | 1116638 | chrX | NT_167197.1 | 18478304-19594942 | 57.13 % in | 1689 repeats | 0.00 % in | 0 genes |
| 15 | 1110244 | chr2 | NT_022184.15 | 29133498-30243742 | 30.34 % in | 1603 repeats | 0.00 % in | 0 genes |
| 16 | 1100518 | chr11 | NT_009237.18 | 37185477-38285995 | 55.28 % in | 1854 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 1534704 | chr12 | NT_029419.12 | 43944331-45479035 | 2528 | 415 | AT_rich (231) | L2a (115) | MIR (101) | |
| 2 | 1476973 | chr4 | NT_016354.19 | 42257564-43734537 | 2215 | 396 | AT_rich (249) | L2a (80) | (TA)n (56) | |
| 3 | 1399993 | chr4 | NT_016354.19 | 37546338-38946331 | 2537 | 357 | AT_rich (199) | AluSx (184) | MIRb (104) | |
| 4 | 1323009 | chr20 | NT_011387.8 | 6730149-8053158 | 2129 | 362 | AT_rich (159) | L2a (75) | MIRb (71) | |
| 5 | 1315452 | chr14 | NT_026437.12 | 43623365-44938817 | 2044 | 358 | AT_rich (114) | MIRb (87) | L2a (79) | |
| 6 | 1286944 | chr2 | NT_005403.17 | 35272984-36559928 | 1983 | 375 | AT_rich (273) | L2a (52) | (TA)n (51) | |
| 7 | 1242806 | chr13 | NT_024524.14 | 38230435-39473241 | 1844 | 371 | AT_rich (245) | AluSx (57) | (TA)n (54) | |
| 8 | 1232976 | chr10 | NT_030059.13 | 8652871-9885847 | 1955 | 386 | AT_rich (209) | MIR (68) | MIRb (63) | |
| 9 | 1189084 | chr3 | NT_005612.16 | 10768163-11957247 | 1879 | 352 | AT_rich (203) | MIR (71) | L2a (67) | |
| 10 | 1182277 | chr2 | NT_022184.15 | 34720671-35902948 | 1776 | 301 | AT_rich (137) | L2a (84) | L2c (79) | |
| 11 | 1177650 | chr12 | NT_029419.12 | 22939058-24116708 | 1880 | 359 | AT_rich (197) | L2a (66) | MIR (54) | |
| 12 | 1134488 | chr4 | NT_016297.16 | 3415699-4550187 | 1858 | 375 | AT_rich (127) | MIR (93) | MIRb (87) | |
| 13 | 1122040 | chr13 | NT_024524.14 | 49262169-50384209 | 1808 | 379 | AT_rich (233) | L2a (60) | MIR (52) | |
| 14 | 1116638 | chrX | NT_167197.1 | 18478304-19594942 | 1689 | 330 | AT_rich (122) | MIRb (64) | L2a (51) | |
| 15 | 1110244 | chr2 | NT_022184.15 | 29133498-30243742 | 1603 | 291 | AT_rich (195) | MIRb (93) | MIR (91) | |
| 16 | 1100518 | chr11 | NT_009237.18 | 37185477-38285995 | 1854 | 361 | AT_rich (172) | MIRb (65) | L2a (65) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 1534704 | chr12 | NT_029419.12 | 43944331-45479035 | PPFIA2 | liprin-alpha-2 |
| VN1R57P | ||||||
| CCDC59 | thyroid_transcription_factor_1-associated_protein_26 | |||||
| LOC100421061 | hypothetical_protein_LOC84190 | |||||
| LOC100418732 | ||||||
| TMTC2 | transmembrane_and_TPR_repeat-containing_protein_2 | |||||
| 2 | 1476973 | chr4 | NT_016354.19 | 42257564-43734537 | LOC100421002 | |
| TRAM1L1 | translocating_chain-associated_membrane_protein_1-like_1 | |||||
| RPSAP35 | ||||||
| NT5C3P1 | ||||||
| LOC100132656 | bifunctional_heparan_sulfate_N-deacetylase/N-sulfotransferase_3 | |||||
| 3 | 1399993 | chr4 | NT_016354.19 | 37546338-38946331 | LOC132719 | |
| RPS12P8 | ||||||
| RPL36AP19 | chromosome_4_open_reading_frame_32 | |||||
| AP1AR | AP-1_complex-associated_regulatory_protein_isoform_b | |||||
| TIFA | TRAF-interacting_protein_with_FHA_domain-containing_protein_A | |||||
| ALPK1 | alpha-protein_kinase_1 | |||||
| LOC285412 | ||||||
| NEUROG2 | neurogenin-2 | |||||
| LOC728914 | prematurely_terminated_mRNA_decay_factor-like | |||||
| MIR302B | microRNA:hsa-mir-302b | |||||
| LOC645264 | ||||||
| LOC256085 | ||||||
| RPL32P13 | ||||||
| RPL7AP30 | ||||||
| LOC100131158 | ||||||
| RPS26P25 | microRNA:hsa-mir-1243 | |||||
| LOC100507209 | hypothetical_protein_LOC100507209 | |||||
| 4 | 1323009 | chr20 | NT_011387.8 | 6730149-8053158 | SRSF10P2 | |
| HAO1 | hydroxyacid_oxidase_1 | |||||
| TMX4 | thioredoxin-related_transmembrane_protein_4_precursor | |||||
| PHKBP1 | ||||||
| 5 | 1315452 | chr14 | NT_026437.12 | 43623365-44938817 | LOC100129782 | |
| KCNH5 | potassium_voltage-gated_channel_subfamily_H_member_5_isoform_2 | |||||
| PARP1P2 | ||||||
| RHOJ | rho-related_GTP-binding_protein_RhoJ_precursor | |||||
| GPHB5 | glycoprotein_hormone_beta-5 | |||||
| PPP2R5E | serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit_epsilon_isoform | |||||
| 6 | 1286944 | chr2 | NT_005403.17 | 35272984-36559928 | RPL23AP33 | zinc_finger_protein_804A |
| LOC100506923 | hypothetical_LOC100506923 | |||||
| 7 | 1242806 | chr13 | NT_024524.14 | 38230435-39473241 | PRR20A | proline-rich_protein_20A |
| PRR20B | proline-rich_protein_20B | |||||
| PRR20C | proline-rich_protein_20C | |||||
| PRR20D | proline-rich_protein_20D | |||||
| PRR20E | proline-rich_protein_20E | |||||
| SLC25A5P4 | ||||||
| RPL31P53 | ||||||
| LOC100129744 | hypothetical_protein_LOC100129744 | |||||
| TRNAE39P | ||||||
| 8 | 1232976 | chr10 | NT_030059.13 | 8652871-9885847 | ZWINT | ZW10_interactor_isoform_b |