| Enzyme: | EsaSSI | Longest uncut segments |
| Specificity: | GACCAC | Repeats in uncut segments |
| Number of sites: | 885065 | Genes in uncut segments |
| Mean distance between sites: | 3232 base pairs | |
| Standard deviation: | 3570 base pairs | |
| Site density | 309.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 492422 | chr15 | NT_037852.6 | 1394848-1887270 | 0.34 % in | 10 repeats | 0.00 % in | 0 genes |
| 2 | 404767 | chr6 | NT_167244.1 | 2356570-2761337 | 0.59 % in | 11 repeats | 0.00 % in | 0 genes |
| 3 | 211338 | chr6 | NT_167244.1 | 4389289-4600627 | 1.12 % in | 14 repeats | 0.00 % in | 0 genes |
| 4 | 188788 | chr6 | NT_167244.1 | 3784593-3973381 | 2.36 % in | 23 repeats | 1.54 % in | 1 genes |
| 5 | 179839 | chr6 | NT_167244.1 | 3176354-3356193 | 1.36 % in | 22 repeats | 2.16 % in | 2 genes |
| 6 | 178797 | chr6 | NT_167247.1 | 4421412-4600209 | 2.08 % in | 18 repeats | 100.00 % in | 1 genes |
| 7 | 177835 | chr6 | NT_167247.1 | 1561751-1739586 | 5.35 % in | 30 repeats | 0.68 % in | 1 genes |
| 8 | 174083 | chr6 | NT_167249.1 | 2130768-2304851 | 3.74 % in | 29 repeats | 0.00 % in | 0 genes |
| 9 | 161670 | chr6 | NT_167248.1 | 519803-681473 | 1.46 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 161477 | chr7 | NT_023603.5 | 39940-201417 | 100.00 % in | 4 repeats | 0.00 % in | 0 genes |
| 11 | 158251 | chr9 | NT_008470.19 | 21689652-21847903 | 2.71 % in | 16 repeats | 0.00 % in | 0 genes |
| 12 | 156858 | chr6 | NT_167244.1 | 2009643-2166501 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 13 | 149491 | chr6 | NT_167244.1 | 2888320-3037811 | 3.49 % in | 27 repeats | 0.00 % in | 0 genes |
| 14 | 125294 | chr6 | NT_167244.1 | 568599-693893 | 9.60 % in | 38 repeats | 0.00 % in | 0 genes |
| 15 | 120042 | chr6 | NT_167245.1 | 133350-253392 | 6.24 % in | 22 repeats | 0.00 % in | 0 genes |
| 16 | 119577 | chr6 | NT_167245.1 | 2605140-2724717 | 1.71 % in | 4 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 492422 | chr15 | NT_037852.6 | 1394848-1887270 | 10 | 10 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 404767 | chr6 | NT_167244.1 | 2356570-2761337 | 11 | 8 | AluJb (3) | L4 (2) | MER8 (1) | |
| 3 | 211338 | chr6 | NT_167244.1 | 4389289-4600627 | 14 | 11 | MER57-int (2) | AluSx (2) | AluSg/x (2) | |
| 4 | 188788 | chr6 | NT_167244.1 | 3784593-3973381 | 23 | 16 | L2a (4) | MLT1H-int (2) | AT_rich (2) | |
| 5 | 179839 | chr6 | NT_167244.1 | 3176354-3356193 | 22 | 14 | AluSx (4) | GC_rich (3) | MER44B (2) | |
| 6 | 178797 | chr6 | NT_167247.1 | 4421412-4600209 | 18 | 14 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 7 | 177835 | chr6 | NT_167247.1 | 1561751-1739586 | 30 | 19 | L1PB2 (4) | L1MEf (3) | MSTB (2) | |
| 8 | 174083 | chr6 | NT_167249.1 | 2130768-2304851 | 29 | 16 | AluSx (5) | L1MB8 (3) | AluJo (3) | |
| 9 | 161670 | chr6 | NT_167248.1 | 519803-681473 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 161477 | chr7 | NT_023603.5 | 39940-201417 | 4 | 2 | L1PA2 (2) | ALR/Alpha (2) | ||
| 11 | 158251 | chr9 | NT_008470.19 | 21689652-21847903 | 16 | 12 | MIRb (2) | LTR67B (2) | L2 (2) | |
| 12 | 156858 | chr6 | NT_167244.1 | 2009643-2166501 | 1 | 1 | MER5A1 (1) | |||
| 13 | 149491 | chr6 | NT_167244.1 | 2888320-3037811 | 27 | 17 | AluY (4) | AluJb (3) | LTR48 (2) | |
| 14 | 125294 | chr6 | NT_167244.1 | 568599-693893 | 38 | 28 | L1MA9 (3) | L1M5 (3) | AT_rich (3) | |
| 15 | 120042 | chr6 | NT_167245.1 | 133350-253392 | 22 | 20 | L2c (2) | AluSx (2) | (TTTC)n (1) | |
| 16 | 119577 | chr6 | NT_167245.1 | 2605140-2724717 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 188788 | chr6 | NT_167244.1 | 3784593-3973381 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 179839 | chr6 | NT_167244.1 | 3176354-3356193 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 178797 | chr6 | NT_167247.1 | 4421412-4600209 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 177835 | chr6 | NT_167247.1 | 1561751-1739586 | LOC100421582 | tripartite_motif-containing_protein_26 |