| Enzyme: | HindII | Longest uncut segments |
| Specificity: | GTYRAC | Repeats in uncut segments |
| Number of sites: | 1097138 | Genes in uncut segments |
| Mean distance between sites: | 2608 base pairs | |
| Standard deviation: | 2748 base pairs | |
| Site density | 383.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490984 | chr15 | NT_037852.6 | 1396758-1887742 | 0.27 % in | 8 repeats | 0.00 % in | 0 genes |
| 2 | 405712 | chr6 | NT_167244.1 | 2358436-2764148 | 0.35 % in | 6 repeats | 0.00 % in | 0 genes |
| 3 | 219145 | chr6 | NT_167244.1 | 4385863-4605008 | 4.46 % in | 21 repeats | 0.00 % in | 0 genes |
| 4 | 188958 | chr6 | NT_167247.1 | 4410773-4599731 | 3.55 % in | 28 repeats | 97.10 % in | 2 genes |
| 5 | 181245 | chr6 | NT_167244.1 | 3789952-3971197 | 0.45 % in | 4 repeats | 0.00 % in | 0 genes |
| 6 | 178605 | chr6 | NT_167244.1 | 3178326-3356931 | 0.53 % in | 9 repeats | 1.48 % in | 2 genes |
| 7 | 169940 | chr6 | NT_167248.1 | 517684-687624 | 5.07 % in | 3 repeats | 0.00 % in | 0 genes |
| 8 | 169112 | chr6 | NT_167249.1 | 2134745-2303857 | 1.66 % in | 14 repeats | 0.00 % in | 0 genes |
| 9 | 167797 | chr6 | NT_167247.1 | 1562036-1729833 | 0.86 % in | 9 repeats | 0.00 % in | 0 genes |
| 10 | 157664 | chr6 | NT_167244.1 | 2009166-2166830 | 0.17 % in | 3 repeats | 0.00 % in | 0 genes |
| 11 | 156466 | chr6 | NT_167244.1 | 2892338-3048804 | 3.09 % in | 25 repeats | 0.00 % in | 0 genes |
| 12 | 153276 | chr9 | NT_008470.19 | 21690746-21844022 | 1.15 % in | 8 repeats | 0.00 % in | 0 genes |
| 13 | 140459 | chr7 | NT_023603.5 | 41865-182324 | 100.00 % in | 1 repeats | 0.00 % in | 0 genes |
| 14 | 124073 | chr6 | NT_167245.1 | 129247-253320 | 7.25 % in | 26 repeats | 0.00 % in | 0 genes |
| 15 | 122504 | chr6 | NT_167247.1 | 1175931-1298435 | 3.14 % in | 7 repeats | 0.00 % in | 0 genes |
| 16 | 122111 | chr6 | NT_167245.1 | 2603332-2725443 | 3.26 % in | 11 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490984 | chr15 | NT_037852.6 | 1396758-1887742 | 8 | 8 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 405712 | chr6 | NT_167244.1 | 2358436-2764148 | 6 | 5 | AluJb (2) | L4 (1) | L1MEg (1) | |
| 3 | 219145 | chr6 | NT_167244.1 | 4385863-4605008 | 21 | 13 | MER57-int (3) | HERVH-int (3) | AluSx (3) | |
| 4 | 188958 | chr6 | NT_167247.1 | 4410773-4599731 | 28 | 21 | L2b (3) | AluSx (3) | MLT1J (2) | |
| 5 | 181245 | chr6 | NT_167244.1 | 3789952-3971197 | 4 | 4 | MLT1H-int (1) | MER52D (1) | AluSc (1) | |
| 6 | 178605 | chr6 | NT_167244.1 | 3178326-3356931 | 9 | 7 | GC_rich (3) | LTR23 (1) | L2a (1) | |
| 7 | 169940 | chr6 | NT_167248.1 | 517684-687624 | 3 | 3 | L1PREC2 (1) | HERVH-int (1) | AT_rich (1) | |
| 8 | 169112 | chr6 | NT_167249.1 | 2134745-2303857 | 14 | 9 | AluSx (3) | MLT1A (2) | L1MB8 (2) | |
| 9 | 167797 | chr6 | NT_167247.1 | 1562036-1729833 | 9 | 7 | MIR (2) | L1MEe (2) | L1MC3 (1) | |
| 10 | 157664 | chr6 | NT_167244.1 | 2009166-2166830 | 3 | 3 | MIRb (1) | MER5A1 (1) | L1MC4a (1) | |
| 11 | 156466 | chr6 | NT_167244.1 | 2892338-3048804 | 25 | 13 | L1MC5 (6) | L2c (3) | AluY (3) | |
| 12 | 153276 | chr9 | NT_008470.19 | 21690746-21844022 | 8 | 6 | LTR67B (2) | L1M4b (2) | MSTA (1) | |
| 13 | 140459 | chr7 | NT_023603.5 | 41865-182324 | 1 | 1 | ALR/Alpha (1) | |||
| 14 | 124073 | chr6 | NT_167245.1 | 129247-253320 | 26 | 23 | L2c (2) | AT_rich (2) | AluSx (2) | |
| 15 | 122504 | chr6 | NT_167247.1 | 1175931-1298435 | 7 | 4 | ERV3-16A3_I-int (4) | L3 (1) | L2a (1) | |
| 16 | 122111 | chr6 | NT_167245.1 | 2603332-2725443 | 11 | 9 | MLT1N2 (2) | L2 (2) | MLT1E2 (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 188958 | chr6 | NT_167247.1 | 4410773-4599731 | COL11A2P | |
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| 6 | 178605 | chr6 | NT_167244.1 | 3178326-3356931 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||