| Enzyme: | BclI | Longest uncut segments |
| Specificity: | TGATCA | Repeats in uncut segments |
| Number of sites: | 731188 | Genes in uncut segments |
| Mean distance between sites: | 3913 base pairs | |
| Standard deviation: | 4075 base pairs | |
| Site density | 255.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 497960 | chr15 | NT_037852.6 | 1390687-1888647 | 1.32 % in | 23 repeats | 0.00 % in | 0 genes |
| 2 | 404116 | chr6 | NT_167244.1 | 2359337-2763453 | 0.14 % in | 3 repeats | 0.00 % in | 0 genes |
| 3 | 248114 | chr6 | NT_167244.1 | 2009696-2257810 | 1.49 % in | 15 repeats | 1.64 % in | 2 genes |
| 4 | 225528 | chr6 | NT_167244.1 | 4376655-4602183 | 4.78 % in | 29 repeats | 3.10 % in | 1 genes |
| 5 | 188269 | chr6 | NT_167244.1 | 3177672-3365941 | 2.93 % in | 28 repeats | 6.54 % in | 2 genes |
| 6 | 187617 | chr6 | NT_167244.1 | 3789750-3977367 | 2.39 % in | 19 repeats | 0.00 % in | 0 genes |
| 7 | 178020 | chr6 | NT_167247.1 | 4421312-4599332 | 2.08 % in | 17 repeats | 100.00 % in | 1 genes |
| 8 | 171223 | chr6 | NT_167247.1 | 1558884-1730107 | 2.26 % in | 18 repeats | 2.38 % in | 1 genes |
| 9 | 171008 | chr7 | NT_023603.5 | 24165-195173 | 99.74 % in | 7 repeats | 0.00 % in | 0 genes |
| 10 | 168170 | chr6 | NT_167249.1 | 2138151-2306321 | 1.62 % in | 13 repeats | 0.00 % in | 0 genes |
| 11 | 166163 | chr6 | NT_167248.1 | 515794-681957 | 3.85 % in | 6 repeats | 0.00 % in | 0 genes |
| 12 | 151506 | chr9 | NT_008470.19 | 21692367-21843873 | 0.48 % in | 3 repeats | 0.00 % in | 0 genes |
| 13 | 148664 | chr6 | NT_167244.1 | 2894560-3043224 | 2.00 % in | 18 repeats | 0.00 % in | 0 genes |
| 14 | 125080 | chr12 | NT_009714.17 | 27183021-27308101 | 81.13 % in | 131 repeats | 0.00 % in | 0 genes |
| 15 | 124421 | chr9 | NT_008470.19 | 21487642-21612063 | 10.20 % in | 50 repeats | 0.00 % in | 0 genes |
| 16 | 119652 | chr6 | NT_167245.1 | 2605146-2724798 | 1.77 % in | 4 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 497960 | chr15 | NT_037852.6 | 1390687-1888647 | 23 | 16 | L1MDa (6) | L2a (3) | (TA)n (1) | |
| 2 | 404116 | chr6 | NT_167244.1 | 2359337-2763453 | 3 | 3 | L4 (1) | L1MEg (1) | AluSp (1) | |
| 3 | 248114 | chr6 | NT_167244.1 | 2009696-2257810 | 15 | 15 | MIRb (1) | MIR (1) | MER5A1 (1) | |
| 4 | 225528 | chr6 | NT_167244.1 | 4376655-4602183 | 29 | 20 | MER57-int (3) | HUERS-P3-int (3) | AluSx (3) | |
| 5 | 188269 | chr6 | NT_167244.1 | 3177672-3365941 | 28 | 17 | AluSx (4) | MIR (3) | GC_rich (3) | |
| 6 | 187617 | chr6 | NT_167244.1 | 3789750-3977367 | 19 | 16 | L2a (3) | MLT1H-int (2) | THE1B (1) | |
| 7 | 178020 | chr6 | NT_167247.1 | 4421312-4599332 | 17 | 13 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 8 | 171223 | chr6 | NT_167247.1 | 1558884-1730107 | 18 | 14 | Tigger7 (2) | MSTD (2) | MIR (2) | |
| 9 | 171008 | chr7 | NT_023603.5 | 24165-195173 | 7 | 4 | L1PA2 (3) | ALR/Alpha (2) | (TATG)n (1) | |
| 10 | 168170 | chr6 | NT_167249.1 | 2138151-2306321 | 13 | 5 | Charlie2b (4) | AluSx (4) | L1MB8 (3) | |
| 11 | 166163 | chr6 | NT_167248.1 | 515794-681957 | 6 | 6 | LTR7 (1) | L1PREC2 (1) | L1P4 (1) | |
| 12 | 151506 | chr9 | NT_008470.19 | 21692367-21843873 | 3 | 3 | MIR3 (1) | LTR67B (1) | L1M5 (1) | |
| 13 | 148664 | chr6 | NT_167244.1 | 2894560-3043224 | 18 | 9 | L1MC5 (6) | L2c (2) | AluY (2) | |
| 14 | 125080 | chr12 | NT_009714.17 | 27183021-27308101 | 131 | 17 | GSATII (108) | GSATX (4) | ALR/Alpha (3) | |
| 15 | 124421 | chr9 | NT_008470.19 | 21487642-21612063 | 50 | 31 | L1ME4a (7) | MLT1F2 (4) | MLT1G1 (3) | |
| 16 | 119652 | chr6 | NT_167245.1 | 2605146-2724798 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 248114 | chr6 | NT_167244.1 | 2009696-2257810 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 4 | 225528 | chr6 | NT_167244.1 | 4376655-4602183 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 5 | 188269 | chr6 | NT_167244.1 | 3177672-3365941 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 178020 | chr6 | NT_167247.1 | 4421312-4599332 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 171223 | chr6 | NT_167247.1 | 1558884-1730107 | LOC100421582 | tripartite_motif-containing_protein_26 |