| Enzyme: | BsrGI | Longest uncut segments |
| Specificity: | TGTACA | Repeats in uncut segments |
| Number of sites: | 824649 | Genes in uncut segments |
| Mean distance between sites: | 3469 base pairs | |
| Standard deviation: | 3899 base pairs | |
| Site density | 288.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 501728 | chr15 | NT_037852.6 | 1395093-1896821 | 1.07 % in | 24 repeats | 0.75 % in | 1 genes |
| 2 | 410293 | chr6 | NT_167244.1 | 2350950-2761243 | 1.44 % in | 28 repeats | 0.00 % in | 0 genes |
| 3 | 212116 | chr6 | NT_167244.1 | 4387060-4599176 | 1.94 % in | 14 repeats | 0.00 % in | 0 genes |
| 4 | 184681 | chr6 | NT_167244.1 | 3788323-3973004 | 1.49 % in | 16 repeats | 0.00 % in | 0 genes |
| 5 | 184541 | chr6 | NT_167244.1 | 3174056-3358597 | 2.76 % in | 32 repeats | 4.65 % in | 2 genes |
| 6 | 180785 | chr6 | NT_167247.1 | 4413736-4594521 | 1.55 % in | 11 repeats | 98.13 % in | 1 genes |
| 7 | 173325 | chr6 | NT_167249.1 | 2132119-2305444 | 3.54 % in | 26 repeats | 0.00 % in | 0 genes |
| 8 | 166607 | chr6 | NT_167247.1 | 1561640-1728247 | 0.74 % in | 6 repeats | 0.79 % in | 1 genes |
| 9 | 165836 | chr6 | NT_167244.1 | 1999423-2165259 | 2.10 % in | 18 repeats | 0.00 % in | 0 genes |
| 10 | 164134 | chr6 | NT_167248.1 | 520944-685078 | 2.94 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 161438 | chr4 | NT_006316.16 | 395937-557375 | 5.37 % in | 57 repeats | 0.00 % in | 0 genes |
| 12 | 155137 | chr9 | NT_008470.19 | 21692937-21848074 | 1.19 % in | 9 repeats | 0.00 % in | 0 genes |
| 13 | 149597 | chr6 | NT_167244.1 | 2890466-3040063 | 3.66 % in | 27 repeats | 0.00 % in | 0 genes |
| 14 | 130343 | chr6 | NT_167245.1 | 116948-247291 | 13.21 % in | 36 repeats | 0.00 % in | 0 genes |
| 15 | 125364 | chr6 | NT_167249.1 | 4716764-4842128 | 10.06 % in | 61 repeats | 0.00 % in | 0 genes |
| 16 | 123640 | chr6 | NT_167247.1 | 1177214-1300854 | 3.60 % in | 13 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 501728 | chr15 | NT_037852.6 | 1395093-1896821 | 24 | 19 | L2a (3) | MER44C (2) | L1M5 (2) | |
| 2 | 410293 | chr6 | NT_167244.1 | 2350950-2761243 | 28 | 19 | AluJb (4) | L1ME4a (3) | MLT2D (2) | |
| 3 | 212116 | chr6 | NT_167244.1 | 4387060-4599176 | 14 | 11 | MER57-int (3) | AluSx (2) | (TTTTA)n (1) | |
| 4 | 184681 | chr6 | NT_167244.1 | 3788323-3973004 | 16 | 13 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 5 | 184541 | chr6 | NT_167244.1 | 3174056-3358597 | 32 | 18 | AluSx (6) | L1MB3 (4) | GC_rich (3) | |
| 6 | 180785 | chr6 | NT_167247.1 | 4413736-4594521 | 11 | 10 | L2b (2) | MIRc (1) | MIRb (1) | |
| 7 | 173325 | chr6 | NT_167249.1 | 2132119-2305444 | 26 | 14 | AluSx (5) | L1MB8 (3) | AluJo (3) | |
| 8 | 166607 | chr6 | NT_167247.1 | 1561640-1728247 | 6 | 5 | MIR (2) | L1MC3 (1) | (GGAA)n (1) | |
| 9 | 165836 | chr6 | NT_167244.1 | 1999423-2165259 | 18 | 13 | AluSx (4) | FRAM (2) | AluJb (2) | |
| 10 | 164134 | chr6 | NT_167248.1 | 520944-685078 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 161438 | chr4 | NT_006316.16 | 395937-557375 | 57 | 7 | (CA)n (44) | L1M4 (7) | L1PA10 (2) | |
| 12 | 155137 | chr9 | NT_008470.19 | 21692937-21848074 | 9 | 7 | MIRb (2) | L2 (2) | MLT1A (1) | |
| 13 | 149597 | chr6 | NT_167244.1 | 2890466-3040063 | 27 | 13 | L1MC5 (6) | AluY (5) | AluSc (3) | |
| 14 | 130343 | chr6 | NT_167245.1 | 116948-247291 | 36 | 25 | AluSx (4) | L1MEg (3) | MER57A1 (2) | |
| 15 | 125364 | chr6 | NT_167249.1 | 4716764-4842128 | 61 | 29 | AluSx (10) | AluY (8) | MLT1C (4) | |
| 16 | 123640 | chr6 | NT_167247.1 | 1177214-1300854 | 13 | 10 | ERV3-16A3_I-int (4) | (TATG)n (1) | (TAAA)n (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 501728 | chr15 | NT_037852.6 | 1395093-1896821 | LOC100418897 | |
| 5 | 184541 | chr6 | NT_167244.1 | 3174056-3358597 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 180785 | chr6 | NT_167247.1 | 4413736-4594521 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 166607 | chr6 | NT_167247.1 | 1561640-1728247 | LOC100421582 | tripartite_motif-containing_protein_26 |