| Enzyme: | PspOMII | Longest uncut segments |
| Specificity: | CGCCCAR | Repeats in uncut segments |
| Number of sites: | 401609 | Genes in uncut segments |
| Mean distance between sites: | 7124 base pairs | |
| Standard deviation: | 11163 base pairs | |
| Site density | 140.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494438 | chr15 | NT_037852.6 | 1397142-1891580 | 0.82 % in | 18 repeats | 0.00 % in | 0 genes |
| 2 | 405337 | chr6 | NT_167244.1 | 2357935-2763272 | 0.46 % in | 8 repeats | 0.00 % in | 0 genes |
| 3 | 304533 | chrY | NT_011875.12 | 8417650-8722183 | 83.07 % in | 39 repeats | 0.26 % in | 1 genes |
| 4 | 288478 | chr19 | NT_011109.16 | 45316-333794 | 99.77 % in | 69 repeats | 0.00 % in | 0 genes |
| 5 | 286074 | chr11 | NT_035158.2 | 1-286075 | 99.85 % in | 70 repeats | 0.03 % in | 1 genes |
| 6 | 258220 | chr11 | NT_009237.18 | 48604109-48862329 | 91.76 % in | 69 repeats | 0.19 % in | 1 genes |
| 7 | 216990 | chr5 | NT_006576.16 | 46154378-46371368 | 99.83 % in | 41 repeats | 0.00 % in | 0 genes |
| 8 | 210098 | chr8 | NT_008046.16 | 33409177-33619275 | 63.67 % in | 332 repeats | 17.76 % in | 1 genes |
| 9 | 208451 | chr6 | NT_167244.1 | 4389514-4597965 | 0.28 % in | 5 repeats | 0.00 % in | 0 genes |
| 10 | 203175 | chr4 | NT_016354.19 | 29784411-29987586 | 46.99 % in | 285 repeats | 0.00 % in | 0 genes |
| 11 | 201665 | chr11 | NT_167190.1 | 1-201666 | 99.87 % in | 56 repeats | 0.00 % in | 0 genes |
| 12 | 199440 | chr6 | NT_167248.1 | 508566-708006 | 13.78 % in | 44 repeats | 0.00 % in | 0 genes |
| 13 | 199197 | chr7 | NT_023603.5 | 7928-207125 | 95.70 % in | 41 repeats | 0.00 % in | 0 genes |
| 14 | 191436 | chr1 | NT_032977.9 | 74088121-74279557 | 56.07 % in | 282 repeats | 0.00 % in | 0 genes |
| 15 | 188815 | chr1 | NT_032977.9 | 53250599-53439414 | 37.75 % in | 315 repeats | 0.00 % in | 0 genes |
| 16 | 188251 | chr3 | NT_005612.16 | 12338106-12526357 | 53.63 % in | 305 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494438 | chr15 | NT_037852.6 | 1397142-1891580 | 18 | 15 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 405337 | chr6 | NT_167244.1 | 2357935-2763272 | 8 | 6 | L4 (2) | AluJb (2) | L1MEg (1) | |
| 3 | 304533 | chrY | NT_011875.12 | 8417650-8722183 | 39 | 15 | LTR12B (17) | L1PA16 (6) | LTR12D (2) | |
| 4 | 288478 | chr19 | NT_011109.16 | 45316-333794 | 69 | 11 | ALR/Alpha (42) | L1PA3 (12) | L1PA4 (6) | |
| 5 | 286074 | chr11 | NT_035158.2 | 1-286075 | 70 | 13 | ALR/Alpha (36) | L1PA4 (8) | L1PA3 (6) | |
| 6 | 258220 | chr11 | NT_009237.18 | 48604109-48862329 | 69 | 22 | ALR/Alpha (28) | L1PA4 (7) | L1PA2 (4) | |
| 7 | 216990 | chr5 | NT_006576.16 | 46154378-46371368 | 41 | 10 | ALR/Alpha (27) | L1PA3 (4) | L1PA4 (2) | |
| 8 | 210098 | chr8 | NT_008046.16 | 33409177-33619275 | 332 | 129 | L2c (23) | MIRb (16) | L2a (14) | |
| 9 | 208451 | chr6 | NT_167244.1 | 4389514-4597965 | 5 | 5 | (TTCC)n (1) | MER57-int (1) | AluY (1) | |
| 10 | 203175 | chr4 | NT_016354.19 | 29784411-29987586 | 285 | 116 | AT_rich (41) | L2c (12) | MIR (11) | |
| 11 | 201665 | chr11 | NT_167190.1 | 1-201666 | 56 | 7 | ALR/Alpha (34) | L1PA3 (5) | L1PA4 (4) | |
| 12 | 199440 | chr6 | NT_167248.1 | 508566-708006 | 44 | 31 | AT_rich (6) | L2c (3) | L2b (3) | |
| 13 | 199197 | chr7 | NT_023603.5 | 7928-207125 | 41 | 23 | AT_rich (8) | L1PA2 (4) | ALR/Alpha (4) | |
| 14 | 191436 | chr1 | NT_032977.9 | 74088121-74279557 | 282 | 58 | AT_rich (39) | L1MA9 (30) | MER5B (10) | |
| 15 | 188815 | chr1 | NT_032977.9 | 53250599-53439414 | 315 | 113 | AT_rich (32) | MIR (20) | MIRb (18) | |
| 16 | 188251 | chr3 | NT_005612.16 | 12338106-12526357 | 305 | 122 | AT_rich (26) | L2a (17) | MIRb (12) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 304533 | chrY | NT_011875.12 | 8417650-8722183 | ZNF884P | |
| 5 | 286074 | chr11 | NT_035158.2 | 1-286075 | x | tRNA-Lys |
| 6 | 258220 | chr11 | NT_009237.18 | 48604109-48862329 | LOC100129384 | |
| 8 | 210098 | chr8 | NT_008046.16 | 33409177-33619275 | MAL2 | protein_MAL2 |