| Enzyme: | PspOMI | Longest uncut segments |
| Specificity: | GGGCCC | Repeats in uncut segments |
| Number of sites: | 457298 | Genes in uncut segments |
| Mean distance between sites: | 6257 base pairs | |
| Standard deviation: | 10138 base pairs | |
| Site density | 159.8 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 508009 | chr15 | NT_037852.6 | 1395902-1903911 | 1.33 % in | 37 repeats | 1.96 % in | 1 genes |
| 2 | 417575 | chr6 | NT_167244.1 | 2343946-2761521 | 2.48 % in | 46 repeats | 0.00 % in | 0 genes |
| 3 | 366724 | chrY | NT_011875.12 | 8406825-8773549 | 82.02 % in | 128 repeats | 0.39 % in | 2 genes |
| 4 | 273163 | chr11 | NT_167190.1 | 1-273164 | 99.67 % in | 77 repeats | 0.00 % in | 0 genes |
| 5 | 245897 | chr13 | NT_024524.14 | 50796407-51042304 | 53.08 % in | 351 repeats | 0.25 % in | 1 genes |
| 6 | 241209 | chr11 | NT_035158.2 | 1-241210 | 99.86 % in | 55 repeats | 0.00 % in | 0 genes |
| 7 | 234834 | chr1 | NT_004487.19 | 49662208-49897042 | 41.61 % in | 357 repeats | 50.24 % in | 1 genes |
| 8 | 230880 | chr6 | NT_167244.1 | 4384459-4615339 | 7.67 % in | 46 repeats | 0.00 % in | 0 genes |
| 9 | 212385 | chrX | NT_011669.17 | 1-212386 | 99.67 % in | 28 repeats | 0.00 % in | 0 genes |
| 10 | 191854 | chr6 | NT_167244.1 | 3779771-3971625 | 2.44 % in | 20 repeats | 0.00 % in | 0 genes |
| 11 | 188600 | chrX | NT_011630.14 | 5872827-6061427 | 99.66 % in | 38 repeats | 0.00 % in | 0 genes |
| 12 | 184705 | chr6 | NT_167248.1 | 504243-688948 | 11.36 % in | 23 repeats | 0.00 % in | 0 genes |
| 13 | 182608 | chr6 | NT_167247.1 | 1562830-1745438 | 6.32 % in | 40 repeats | 0.00 % in | 0 genes |
| 14 | 181385 | chr6 | NT_167249.1 | 2132036-2313421 | 5.91 % in | 51 repeats | 0.00 % in | 0 genes |
| 15 | 179820 | chr1 | NT_032977.9 | 49995684-50175504 | 56.13 % in | 297 repeats | 0.00 % in | 0 genes |
| 16 | 177088 | chr6 | NT_167247.1 | 4421857-4598945 | 1.91 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 508009 | chr15 | NT_037852.6 | 1395902-1903911 | 37 | 25 | AT_rich (5) | (TA)n (3) | L2a (3) | |
| 2 | 417575 | chr6 | NT_167244.1 | 2343946-2761521 | 46 | 27 | AluJb (5) | AluSx (4) | L1ME4a (3) | |
| 3 | 366724 | chrY | NT_011875.12 | 8406825-8773549 | 128 | 49 | LTR12B (17) | AT_rich (10) | A-rich (9) | |
| 4 | 273163 | chr11 | NT_167190.1 | 1-273164 | 77 | 9 | ALR/Alpha (49) | L1PA4 (6) | L1PA3 (5) | |
| 5 | 245897 | chr13 | NT_024524.14 | 50796407-51042304 | 351 | 133 | AT_rich (47) | MIR (14) | (TA)n (11) | |
| 6 | 241209 | chr11 | NT_035158.2 | 1-241210 | 55 | 10 | ALR/Alpha (29) | L1PA4 (6) | L1PA3 (6) | |
| 7 | 234834 | chr1 | NT_004487.19 | 49662208-49897042 | 357 | 118 | AT_rich (34) | L2a (29) | MIRb (17) | |
| 8 | 230880 | chr6 | NT_167244.1 | 4384459-4615339 | 46 | 24 | AluSx (7) | Harlequin-int (5) | HERVH-int (4) | |
| 9 | 212385 | chrX | NT_011669.17 | 1-212386 | 28 | 6 | ALR/Alpha (17) | L1PA3 (4) | L1PA2 (4) | |
| 10 | 191854 | chr6 | NT_167244.1 | 3779771-3971625 | 20 | 15 | L2a (3) | AT_rich (2) | AluSc (2) | |
| 11 | 188600 | chrX | NT_011630.14 | 5872827-6061427 | 38 | 10 | ALR/Alpha (25) | L1PA4 (3) | L1PA3 (2) | |
| 12 | 184705 | chr6 | NT_167248.1 | 504243-688948 | 23 | 19 | MER4D (2) | L1PA14 (2) | L1M5 (2) | |
| 13 | 182608 | chr6 | NT_167247.1 | 1562830-1745438 | 40 | 22 | L1MEf (6) | L1PB2 (4) | MSTB (2) | |
| 14 | 181385 | chr6 | NT_167249.1 | 2132036-2313421 | 51 | 27 | AluSx (7) | Charlie2b (6) | L1MB8 (3) | |
| 15 | 179820 | chr1 | NT_032977.9 | 49995684-50175504 | 297 | 114 | AT_rich (32) | L2a (14) | MER31-int (11) | |
| 16 | 177088 | chr6 | NT_167247.1 | 4421857-4598945 | 16 | 12 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 508009 | chr15 | NT_037852.6 | 1395902-1903911 | LOC100418897 | |
| 3 | 366724 | chrY | NT_011875.12 | 8406825-8773549 | ZNF884P | |
| ZNF885P | ||||||
| 5 | 245897 | chr13 | NT_024524.14 | 50796407-51042304 | LOC100128625 | |
| 7 | 234834 | chr1 | NT_004487.19 | 49662208-49897042 | NEK7 | serine/threonine-protein_kinase_Nek7 |