| Enzyme: | HgiCI | Longest uncut segments |
| Specificity: | GGYRCC | Repeats in uncut segments |
| Number of sites: | 1542683 | Genes in uncut segments |
| Mean distance between sites: | 1854 base pairs | |
| Standard deviation: | 2280 base pairs | |
| Site density | 539.1 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490129 | chr15 | NT_037852.6 | 1397157-1887286 | 0.20 % in | 7 repeats | 0.00 % in | 0 genes |
| 2 | 402911 | chr6 | NT_167244.1 | 2359609-2762520 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 213749 | chr6 | NT_167244.1 | 4387334-4601083 | 2.24 % in | 14 repeats | 0.00 % in | 0 genes |
| 4 | 189460 | chrY | NT_011875.12 | 8433387-8622847 | 73.54 % in | 10 repeats | 0.00 % in | 0 genes |
| 5 | 182866 | chr6 | NT_167244.1 | 3788315-3971181 | 0.76 % in | 8 repeats | 0.00 % in | 0 genes |
| 6 | 176158 | chr6 | NT_167244.1 | 3179938-3356096 | 0.24 % in | 5 repeats | 0.16 % in | 1 genes |
| 7 | 173911 | chr6 | NT_167247.1 | 4421517-4595428 | 0.68 % in | 3 repeats | 100.00 % in | 1 genes |
| 8 | 168435 | chr6 | NT_167248.1 | 521445-689880 | 3.08 % in | 6 repeats | 0.67 % in | 1 genes |
| 9 | 167951 | chr6 | NT_167247.1 | 1559547-1727498 | 1.27 % in | 9 repeats | 0.00 % in | 0 genes |
| 10 | 167677 | chr6 | NT_167249.1 | 2137165-2304842 | 1.20 % in | 10 repeats | 0.00 % in | 0 genes |
| 11 | 161216 | chr7 | NT_023603.5 | 32972-194188 | 100.00 % in | 4 repeats | 0.00 % in | 0 genes |
| 12 | 152390 | chr9 | NT_008470.19 | 21692391-21844781 | 0.67 % in | 5 repeats | 0.00 % in | 0 genes |
| 13 | 146707 | chr6 | NT_167244.1 | 2893107-3039814 | 1.93 % in | 17 repeats | 0.00 % in | 0 genes |
| 14 | 122594 | chr10 | NT_008705.16 | 38712206-38834800 | 26.87 % in | 218 repeats | 0.00 % in | 0 genes |
| 15 | 120678 | chr6 | NT_167245.1 | 2603696-2724374 | 2.26 % in | 7 repeats | 0.00 % in | 0 genes |
| 16 | 118361 | chr6 | NT_167244.1 | 1451334-1569695 | 10.42 % in | 23 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490129 | chr15 | NT_037852.6 | 1397157-1887286 | 7 | 7 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 402911 | chr6 | NT_167244.1 | 2359609-2762520 | 1 | 1 | AluSp (1) | |||
| 3 | 213749 | chr6 | NT_167244.1 | 4387334-4601083 | 14 | 11 | MER57-int (2) | AluSx (2) | AluSg/x (2) | |
| 4 | 189460 | chrY | NT_011875.12 | 8433387-8622847 | 10 | 2 | LTR12B (9) | LTR12D (1) | ||
| 5 | 182866 | chr6 | NT_167244.1 | 3788315-3971181 | 8 | 7 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 6 | 176158 | chr6 | NT_167244.1 | 3179938-3356096 | 5 | 4 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 7 | 173911 | chr6 | NT_167247.1 | 4421517-4595428 | 3 | 3 | MER11A (1) | AluSg/x (1) | AluSc (1) | |
| 8 | 168435 | chr6 | NT_167248.1 | 521445-689880 | 6 | 4 | AT_rich (3) | L1PREC2 (1) | HERVH-int (1) | |
| 9 | 167951 | chr6 | NT_167247.1 | 1559547-1727498 | 9 | 8 | Tigger7 (2) | MIRc (1) | MIR (1) | |
| 10 | 167677 | chr6 | NT_167249.1 | 2137165-2304842 | 10 | 6 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 11 | 161216 | chr7 | NT_023603.5 | 32972-194188 | 4 | 2 | L1PA2 (3) | ALR/Alpha (1) | ||
| 12 | 152390 | chr9 | NT_008470.19 | 21692391-21844781 | 5 | 4 | L2 (2) | MIR3 (1) | LTR67B (1) | |
| 13 | 146707 | chr6 | NT_167244.1 | 2893107-3039814 | 17 | 8 | L1MC5 (5) | AluY (3) | AluSc (3) | |
| 14 | 122594 | chr10 | NT_008705.16 | 38712206-38834800 | 218 | 32 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
| 15 | 120678 | chr6 | NT_167245.1 | 2603696-2724374 | 7 | 7 | MLT1N2 (1) | MLT1E2 (1) | MER5B (1) | |
| 16 | 118361 | chr6 | NT_167244.1 | 1451334-1569695 | 23 | 14 | L1MA1 (7) | MSTA (2) | AluSx (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 6 | 176158 | chr6 | NT_167244.1 | 3179938-3356096 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 173911 | chr6 | NT_167247.1 | 4421517-4595428 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 168435 | chr6 | NT_167248.1 | 521445-689880 | OR12D1P | |