| Enzyme: | MaqI | Longest uncut segments |
| Specificity: | CRTTGAC | Repeats in uncut segments |
| Number of sites: | 276950 | Genes in uncut segments |
| Mean distance between sites: | 10331 base pairs | |
| Standard deviation: | 10900 base pairs | |
| Site density | 96.8 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 498312 | chr15 | NT_037852.6 | 1394681-1892993 | 1.13 % in | 25 repeats | 0.00 % in | 0 genes |
| 2 | 474827 | chr6 | NT_167244.1 | 2315059-2789886 | 8.32 % in | 151 repeats | 3.16 % in | 2 genes |
| 3 | 259800 | chr6 | NT_167244.1 | 2007434-2267234 | 3.58 % in | 42 repeats | 4.02 % in | 3 genes |
| 4 | 251374 | chr6 | NT_167244.1 | 3178980-3430354 | 6.34 % in | 68 repeats | 5.45 % in | 2 genes |
| 5 | 224047 | chr6 | NT_167247.1 | 4390430-4614477 | 8.72 % in | 61 repeats | 89.51 % in | 5 genes |
| 6 | 213925 | chr6 | NT_167249.1 | 2092480-2306405 | 10.04 % in | 96 repeats | 0.00 % in | 0 genes |
| 7 | 213409 | chr7 | NT_023603.5 | 12349-225758 | 97.33 % in | 32 repeats | 0.00 % in | 0 genes |
| 8 | 204347 | chr6 | NT_167246.1 | 3254114-3458461 | 10.01 % in | 93 repeats | 19.76 % in | 3 genes |
| 9 | 200682 | chrY | NT_011875.12 | 8540178-8740860 | 72.84 % in | 67 repeats | 0.00 % in | 0 genes |
| 10 | 199624 | chr6 | NT_167247.1 | 1552452-1752076 | 10.63 % in | 84 repeats | 0.00 % in | 0 genes |
| 11 | 190780 | chr6 | NT_167244.1 | 3787404-3978184 | 2.80 % in | 25 repeats | 0.00 % in | 0 genes |
| 12 | 181093 | chr6 | NT_167244.1 | 1802296-1983389 | 23.40 % in | 181 repeats | 0.00 % in | 0 genes |
| 13 | 178401 | chr12 | NT_029419.12 | 184524-362925 | 99.79 % in | 41 repeats | 0.00 % in | 0 genes |
| 14 | 170246 | chr6 | NT_167244.1 | 2876914-3047160 | 9.57 % in | 81 repeats | 0.00 % in | 0 genes |
| 15 | 164550 | chr6 | NT_167248.1 | 519622-684172 | 3.18 % in | 2 repeats | 0.00 % in | 0 genes |
| 16 | 164423 | chr9 | NT_008470.19 | 21689526-21853949 | 4.36 % in | 24 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 498312 | chr15 | NT_037852.6 | 1394681-1892993 | 25 | 19 | L2a (3) | MER44C (2) | L1MDa (2) | |
| 2 | 474827 | chr6 | NT_167244.1 | 2315059-2789886 | 151 | 65 | AluSx (11) | AluY (8) | AluJo (8) | |
| 3 | 259800 | chr6 | NT_167244.1 | 2007434-2267234 | 42 | 26 | MIR (5) | AluSx (5) | MIRb (3) | |
| 4 | 251374 | chr6 | NT_167244.1 | 3178980-3430354 | 68 | 25 | AluSx (11) | AluSq (5) | MIR (4) | |
| 5 | 224047 | chr6 | NT_167247.1 | 4390430-4614477 | 61 | 39 | L1PB1 (5) | MIR (3) | L2b (3) | |
| 6 | 213925 | chr6 | NT_167249.1 | 2092480-2306405 | 96 | 45 | AluSx (11) | AluJb (9) | AluJo (5) | |
| 7 | 213409 | chr7 | NT_023603.5 | 12349-225758 | 32 | 19 | AT_rich (5) | L1PA2 (4) | ALR/Alpha (4) | |
| 8 | 204347 | chr6 | NT_167246.1 | 3254114-3458461 | 93 | 36 | AluSx (14) | AluSq (7) | AluY (5) | |
| 9 | 200682 | chrY | NT_011875.12 | 8540178-8740860 | 67 | 29 | LTR12B (10) | A-rich (9) | L1PA16 (7) | |
| 10 | 199624 | chr6 | NT_167247.1 | 1552452-1752076 | 84 | 50 | L1MEf (6) | L1PB2 (4) | AluSq (4) | |
| 11 | 190780 | chr6 | NT_167244.1 | 3787404-3978184 | 25 | 20 | L2a (3) | MLT1H-int (2) | L1M5 (2) | |
| 12 | 181093 | chr6 | NT_167244.1 | 1802296-1983389 | 181 | 52 | AluSx (25) | L1MC4 (16) | AluJb (12) | |
| 13 | 178401 | chr12 | NT_029419.12 | 184524-362925 | 41 | 9 | ALR/Alpha (22) | L1PA3 (9) | (TTA)n (2) | |
| 14 | 170246 | chr6 | NT_167244.1 | 2876914-3047160 | 81 | 27 | AluJo (11) | AluY (8) | AluSx (8) | |
| 15 | 164550 | chr6 | NT_167248.1 | 519622-684172 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 16 | 164423 | chr9 | NT_008470.19 | 21689526-21853949 | 24 | 18 | MIRb (2) | LTR67B (2) | L2 (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 2 | 474827 | chr6 | NT_167244.1 | 2315059-2789886 | HCG22 | HLA_complex_group_22 |
| MICB | MHC_class_I_polypeptide-related_sequence_B_precursor | |||||
| 3 | 259800 | chr6 | NT_167244.1 | 2007434-2267234 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| MUC21 | mucin-21_precursor | |||||
| 4 | 251374 | chr6 | NT_167244.1 | 3178980-3430354 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 5 | 224047 | chr6 | NT_167247.1 | 4390430-4614477 | RPL32P1 | HLA_class_II_histocompatibility_antigen,_DP_beta_1_chain_precursor |
| HLA-DPA2 | ||||||
| COL11A2P | ||||||
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| COL11A2 | collagen_alpha-2(XI)_chain_isoform_4_precursor | |||||
| 8 | 204347 | chr6 | NT_167246.1 | 3254114-3458461 | C2 | complement_C2_isoform_3 |
| CFB | complement_factor_B_preproprotein_preproprotein | |||||
| TNXB | tenascin-X_isoform_1_precursor | |||||