| Enzyme: | BmrI | Longest uncut segments |
| Specificity: | ACTGGG | Repeats in uncut segments |
| Number of sites: | 1686472 | Genes in uncut segments |
| Mean distance between sites: | 1696 base pairs | |
| Standard deviation: | 1898 base pairs | |
| Site density | 589.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 493089 | chr15 | NT_037852.6 | 1395980-1889069 | 0.54 % in | 13 repeats | 0.00 % in | 0 genes |
| 2 | 401629 | chr6 | NT_167244.1 | 2359650-2761279 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 209746 | chr6 | NT_167244.1 | 4389571-4599317 | 0.80 % in | 9 repeats | 0.00 % in | 0 genes |
| 4 | 183985 | chr6 | NT_167244.1 | 3786867-3970852 | 0.59 % in | 7 repeats | 0.34 % in | 1 genes |
| 5 | 178295 | chr6 | NT_167247.1 | 4418533-4596828 | 1.46 % in | 11 repeats | 100.00 % in | 1 genes |
| 6 | 175806 | chr6 | NT_167244.1 | 3179563-3355369 | 0.12 % in | 5 repeats | 0.38 % in | 1 genes |
| 7 | 167391 | chr6 | NT_167247.1 | 1561778-1729169 | 0.85 % in | 8 repeats | 0.70 % in | 1 genes |
| 8 | 166915 | chr6 | NT_167249.1 | 2137588-2304503 | 0.90 % in | 8 repeats | 0.00 % in | 0 genes |
| 9 | 163869 | chr7 | NT_023603.5 | 32112-195981 | 100.00 % in | 5 repeats | 0.00 % in | 0 genes |
| 10 | 159729 | chr6 | NT_167248.1 | 521831-681560 | 0.26 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 152097 | chr9 | NT_008470.19 | 21692590-21844687 | 0.60 % in | 5 repeats | 0.00 % in | 0 genes |
| 12 | 149533 | chrY | NT_011875.12 | 8417106-8566639 | 99.70 % in | 13 repeats | 0.00 % in | 0 genes |
| 13 | 144472 | chr6 | NT_167244.1 | 2893845-3038317 | 0.84 % in | 7 repeats | 0.00 % in | 0 genes |
| 14 | 119327 | chr6 | NT_167245.1 | 2605597-2724924 | 1.50 % in | 4 repeats | 0.00 % in | 0 genes |
| 15 | 119094 | chr6 | NT_167244.1 | 583607-702701 | 7.77 % in | 36 repeats | 0.00 % in | 0 genes |
| 16 | 116917 | chr6 | NT_167247.1 | 1177468-1294385 | 0.17 % in | 1 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 493089 | chr15 | NT_037852.6 | 1395980-1889069 | 13 | 11 | L2a (3) | (TA)n (1) | MLT1L (1) | |
| 2 | 401629 | chr6 | NT_167244.1 | 2359650-2761279 | 1 | 1 | AluSp (1) | |||
| 3 | 209746 | chr6 | NT_167244.1 | 4389571-4599317 | 9 | 8 | AluSx (2) | (TTCC)n (1) | MER57-int (1) | |
| 4 | 183985 | chr6 | NT_167244.1 | 3786867-3970852 | 7 | 6 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 178295 | chr6 | NT_167247.1 | 4418533-4596828 | 11 | 11 | (TTAAA)n (1) | MLT1J (1) | MIRb (1) | |
| 6 | 175806 | chr6 | NT_167244.1 | 3179563-3355369 | 5 | 3 | GC_rich (3) | (CCG)n (1) | AluSp (1) | |
| 7 | 167391 | chr6 | NT_167247.1 | 1561778-1729169 | 8 | 6 | MIR (2) | L1MEe (2) | L1MC3 (1) | |
| 8 | 166915 | chr6 | NT_167249.1 | 2137588-2304503 | 8 | 4 | L1MB8 (3) | AluSx (3) | L1MC4a (1) | |
| 9 | 163869 | chr7 | NT_023603.5 | 32112-195981 | 5 | 2 | L1PA2 (4) | ALR/Alpha (1) | ||
| 10 | 159729 | chr6 | NT_167248.1 | 521831-681560 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 152097 | chr9 | NT_008470.19 | 21692590-21844687 | 5 | 4 | L2 (2) | MIR3 (1) | LTR67B (1) | |
| 12 | 149533 | chrY | NT_011875.12 | 8417106-8566639 | 13 | 4 | LTR12B (9) | LTR12D (2) | L1PA7 (1) | |
| 13 | 144472 | chr6 | NT_167244.1 | 2893845-3038317 | 7 | 6 | AluJo (2) | L1MC5 (1) | AluY (1) | |
| 14 | 119327 | chr6 | NT_167245.1 | 2605597-2724924 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 15 | 119094 | chr6 | NT_167244.1 | 583607-702701 | 36 | 25 | L2b (3) | L1MA9 (3) | L1M5 (3) | |
| 16 | 116917 | chr6 | NT_167247.1 | 1177468-1294385 | 1 | 1 | ERV3-16A3_I-int (1) | |||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 183985 | chr6 | NT_167244.1 | 3786867-3970852 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 178295 | chr6 | NT_167247.1 | 4418533-4596828 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 6 | 175806 | chr6 | NT_167244.1 | 3179563-3355369 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 167391 | chr6 | NT_167247.1 | 1561778-1729169 | LOC100421582 | tripartite_motif-containing_protein_26 |