| Enzyme: | HaeIV | Longest uncut segments |
| Specificity: | GAYNNNNNRTC | Repeats in uncut segments |
| Number of sites: | 1363636 | Genes in uncut segments |
| Mean distance between sites: | 2098 base pairs | |
| Standard deviation: | 2175 base pairs | |
| Site density | 476.6 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 493181 | chr15 | NT_037852.6 | 1393577-1886758 | 0.53 % in | 11 repeats | 0.00 % in | 0 genes |
| 2 | 408465 | chr6 | NT_167244.1 | 2354695-2763160 | 0.94 % in | 18 repeats | 0.00 % in | 0 genes |
| 3 | 211812 | chr6 | NT_167244.1 | 4389846-4601658 | 1.35 % in | 11 repeats | 0.00 % in | 0 genes |
| 4 | 188880 | chr6 | NT_167244.1 | 3790048-3978928 | 2.79 % in | 23 repeats | 0.00 % in | 0 genes |
| 5 | 184625 | chr6 | NT_167247.1 | 4414134-4598759 | 3.01 % in | 21 repeats | 98.39 % in | 1 genes |
| 6 | 184522 | chr6 | NT_167244.1 | 3179730-3364252 | 2.18 % in | 20 repeats | 4.64 % in | 2 genes |
| 7 | 172795 | chr6 | NT_167247.1 | 1556910-1729705 | 2.71 % in | 24 repeats | 3.50 % in | 1 genes |
| 8 | 171784 | chr6 | NT_167249.1 | 2135765-2307549 | 3.13 % in | 25 repeats | 0.00 % in | 0 genes |
| 9 | 162339 | chr6 | NT_167248.1 | 520336-682675 | 1.87 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 154809 | chr9 | NT_008470.19 | 21688861-21843670 | 2.33 % in | 9 repeats | 0.00 % in | 0 genes |
| 11 | 144440 | chr6 | NT_167244.1 | 2893873-3038313 | 0.84 % in | 7 repeats | 0.00 % in | 0 genes |
| 12 | 126796 | chr1 | NT_077389.3 | 262939-389735 | 98.71 % in | 58 repeats | 0.00 % in | 0 genes |
| 13 | 119654 | chr1 | NT_004350.19 | 2058104-2177758 | 3.78 % in | 9 repeats | 0.00 % in | 0 genes |
| 14 | 119622 | chr6 | NT_167245.1 | 2604767-2724389 | 1.66 % in | 5 repeats | 0.00 % in | 0 genes |
| 15 | 119478 | chr6 | NT_167247.1 | 1173244-1292722 | 3.59 % in | 7 repeats | 0.00 % in | 0 genes |
| 16 | 116508 | chr6 | NT_167246.1 | 3259727-3376235 | 0.88 % in | 7 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 493181 | chr15 | NT_037852.6 | 1393577-1886758 | 11 | 9 | L1MDa (3) | MIRc (1) | MIRb (1) | |
| 2 | 408465 | chr6 | NT_167244.1 | 2354695-2763160 | 18 | 11 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 211812 | chr6 | NT_167244.1 | 4389846-4601658 | 11 | 8 | HERVH-int (2) | AluSx (2) | AluSg/x (2) | |
| 4 | 188880 | chr6 | NT_167244.1 | 3790048-3978928 | 23 | 18 | L2a (4) | MLT1H-int (2) | L1M5 (2) | |
| 5 | 184625 | chr6 | NT_167247.1 | 4414134-4598759 | 21 | 17 | AluSx (3) | MLT1J (2) | L2b (2) | |
| 6 | 184522 | chr6 | NT_167244.1 | 3179730-3364252 | 20 | 10 | AluSx (4) | MIR (3) | GC_rich (3) | |
| 7 | 172795 | chr6 | NT_167247.1 | 1556910-1729705 | 24 | 18 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 8 | 171784 | chr6 | NT_167249.1 | 2135765-2307549 | 25 | 12 | Charlie2b (6) | AluSx (5) | L1MB8 (3) | |
| 9 | 162339 | chr6 | NT_167248.1 | 520336-682675 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 154809 | chr9 | NT_008470.19 | 21688861-21843670 | 9 | 7 | LTR67B (2) | L1M4b (2) | MSTA (1) | |
| 11 | 144440 | chr6 | NT_167244.1 | 2893873-3038313 | 7 | 6 | AluJo (2) | L1MC5 (1) | AluY (1) | |
| 12 | 126796 | chr1 | NT_077389.3 | 262939-389735 | 58 | 6 | ALR/Alpha (52) | MLT1J (2) | L2a (1) | |
| 13 | 119654 | chr1 | NT_004350.19 | 2058104-2177758 | 9 | 5 | L1MB3 (4) | AluSg (2) | MER8 (1) | |
| 14 | 119622 | chr6 | NT_167245.1 | 2604767-2724389 | 5 | 5 | MLT1E2 (1) | MER5B (1) | MER5A1 (1) | |
| 15 | 119478 | chr6 | NT_167247.1 | 1173244-1292722 | 7 | 4 | L2 (3) | ERV3-16A3_I-int (2) | MLT1E2 (1) | |
| 16 | 116508 | chr6 | NT_167246.1 | 3259727-3376235 | 7 | 5 | MIRb (2) | AluSx (2) | MIR3 (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 184625 | chr6 | NT_167247.1 | 4414134-4598759 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 6 | 184522 | chr6 | NT_167244.1 | 3179730-3364252 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 172795 | chr6 | NT_167247.1 | 1556910-1729705 | LOC100421582 | tripartite_motif-containing_protein_26 |