| Enzyme: | SapI | Longest uncut segments |
| Specificity: | GCTCTTC | Repeats in uncut segments |
| Number of sites: | 373304 | Genes in uncut segments |
| Mean distance between sites: | 7664 base pairs | |
| Standard deviation: | 8282 base pairs | |
| Site density | 130.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 497976 | chr15 | NT_037852.6 | 1396296-1894272 | 1.06 % in | 23 repeats | 0.24 % in | 1 genes |
| 2 | 412948 | chr6 | NT_167244.1 | 2349804-2762752 | 1.71 % in | 33 repeats | 0.00 % in | 0 genes |
| 3 | 317234 | chrY | NT_011875.12 | 8415597-8732831 | 83.02 % in | 68 repeats | 0.25 % in | 1 genes |
| 4 | 263468 | chr6 | NT_167244.1 | 2003608-2267076 | 4.13 % in | 51 repeats | 4.84 % in | 4 genes |
| 5 | 246212 | chr7 | NT_077528.2 | 37698-283910 | 79.50 % in | 47 repeats | 0.00 % in | 0 genes |
| 6 | 195500 | chr7 | NT_023603.5 | 1-195501 | 93.98 % in | 60 repeats | 0.00 % in | 0 genes |
| 7 | 193991 | chr6 | NT_167244.1 | 3163980-3357971 | 4.74 % in | 55 repeats | 9.30 % in | 2 genes |
| 8 | 186998 | chr6 | NT_167244.1 | 3783644-3970642 | 1.74 % in | 14 repeats | 2.06 % in | 1 genes |
| 9 | 179328 | chr6 | NT_167246.1 | 3051658-3230986 | 13.42 % in | 100 repeats | 0.00 % in | 0 genes |
| 10 | 174691 | chr6 | NT_167247.1 | 4421539-4596230 | 0.97 % in | 6 repeats | 0.00 % in | 0 genes |
| 11 | 171321 | chrX | NT_011630.14 | 5705236-5876557 | 99.42 % in | 78 repeats | 0.00 % in | 0 genes |
| 12 | 171034 | chr6 | NT_167248.1 | 519530-690564 | 4.17 % in | 7 repeats | 0.00 % in | 0 genes |
| 13 | 168067 | chr6 | NT_167249.1 | 2134982-2303049 | 1.25 % in | 9 repeats | 0.00 % in | 0 genes |
| 14 | 167871 | chr6 | NT_167247.1 | 1559995-1727866 | 1.31 % in | 10 repeats | 0.00 % in | 0 genes |
| 15 | 160297 | chr9 | NT_008470.19 | 21684133-21844430 | 4.16 % in | 21 repeats | 0.00 % in | 0 genes |
| 16 | 155307 | chr6 | NT_167244.1 | 2886454-3041761 | 5.82 % in | 48 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 497976 | chr15 | NT_037852.6 | 1396296-1894272 | 23 | 18 | L2a (3) | MER44C (2) | L1M5 (2) | |
| 2 | 412948 | chr6 | NT_167244.1 | 2349804-2762752 | 33 | 23 | AluJb (4) | L1ME4a (3) | AluSx (3) | |
| 3 | 317234 | chrY | NT_011875.12 | 8415597-8732831 | 68 | 29 | LTR12B (17) | L1PA16 (7) | L1ME3A (6) | |
| 4 | 263468 | chr6 | NT_167244.1 | 2003608-2267076 | 51 | 28 | AluSx (7) | MIR (5) | MIRb (3) | |
| 5 | 246212 | chr7 | NT_077528.2 | 37698-283910 | 47 | 7 | ALR/Alpha (29) | L1PA4 (5) | L1P1 (4) | |
| 6 | 195500 | chr7 | NT_023603.5 | 1-195501 | 60 | 34 | AT_rich (8) | L1PA2 (4) | (TA)n (3) | |
| 7 | 193991 | chr6 | NT_167244.1 | 3163980-3357971 | 55 | 30 | L1MC5 (6) | AluSx (6) | L1MB3 (4) | |
| 8 | 186998 | chr6 | NT_167244.1 | 3783644-3970642 | 14 | 10 | L2a (3) | AT_rich (2) | AluJb (2) | |
| 9 | 179328 | chr6 | NT_167246.1 | 3051658-3230986 | 100 | 40 | AluSx (15) | AluY (10) | AluJb (7) | |
| 10 | 174691 | chr6 | NT_167247.1 | 4421539-4596230 | 6 | 6 | (TTAAA)n (1) | MLT1J (1) | MER11A (1) | |
| 11 | 171321 | chrX | NT_011630.14 | 5705236-5876557 | 78 | 20 | ALR/Alpha (21) | HSAT4 (20) | GSATX (13) | |
| 12 | 171034 | chr6 | NT_167248.1 | 519530-690564 | 7 | 4 | AT_rich (4) | L1PREC2 (1) | HERVH-int (1) | |
| 13 | 168067 | chr6 | NT_167249.1 | 2134982-2303049 | 9 | 7 | MLT1A (2) | AluJb (2) | MamGypLTR1b (1) | |
| 14 | 167871 | chr6 | NT_167247.1 | 1559995-1727866 | 10 | 8 | Tigger7 (2) | MIR (2) | MIRc (1) | |
| 15 | 160297 | chr9 | NT_008470.19 | 21684133-21844430 | 21 | 14 | L1M5 (3) | MER5B (2) | LTR67B (2) | |
| 16 | 155307 | chr6 | NT_167244.1 | 2886454-3041761 | 48 | 22 | L1MC5 (6) | AluY (6) | AluSx (4) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 497976 | chr15 | NT_037852.6 | 1396296-1894272 | LOC100418897 | |
| 3 | 317234 | chrY | NT_011875.12 | 8415597-8732831 | ZNF884P | |
| 4 | 263468 | chr6 | NT_167244.1 | 2003608-2267076 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| MUC21 | mucin-21_precursor | |||||
| 7 | 193991 | chr6 | NT_167244.1 | 3163980-3357971 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 8 | 186998 | chr6 | NT_167244.1 | 3783644-3970642 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |