| Enzyme: | BsiHKAI | Longest uncut segments |
| Specificity: | GWGCWC | Repeats in uncut segments |
| Number of sites: | 2034720 | Genes in uncut segments |
| Mean distance between sites: | 1406 base pairs | |
| Standard deviation: | 1600 base pairs | |
| Site density | 711.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 487849 | chr15 | NT_037852.6 | 1398572-1886421 | 0.01 % in | 1 repeats | 0.00 % in | 0 genes |
| 2 | 403287 | chr6 | NT_167244.1 | 2357987-2761274 | 0.40 % in | 7 repeats | 0.00 % in | 0 genes |
| 3 | 209699 | chr6 | NT_167244.1 | 4388443-4598142 | 0.86 % in | 6 repeats | 0.00 % in | 0 genes |
| 4 | 183265 | chr6 | NT_167244.1 | 3787380-3970645 | 0.48 % in | 7 repeats | 0.06 % in | 1 genes |
| 5 | 176214 | chr6 | NT_167244.1 | 3179922-3356136 | 0.24 % in | 5 repeats | 0.17 % in | 1 genes |
| 6 | 172681 | chr6 | NT_167247.1 | 4421972-4594653 | 0.23 % in | 2 repeats | 100.00 % in | 1 genes |
| 7 | 169919 | chr6 | NT_167249.1 | 2135698-2305617 | 2.29 % in | 17 repeats | 0.00 % in | 0 genes |
| 8 | 166014 | chr6 | NT_167247.1 | 1562927-1728941 | 0.50 % in | 5 repeats | 0.02 % in | 1 genes |
| 9 | 164450 | chr6 | NT_167248.1 | 516885-681335 | 3.13 % in | 3 repeats | 0.00 % in | 0 genes |
| 10 | 159161 | chr6 | NT_167244.1 | 2006736-2165897 | 1.02 % in | 7 repeats | 0.00 % in | 0 genes |
| 11 | 152268 | chr9 | NT_008470.19 | 21692627-21844895 | 0.67 % in | 5 repeats | 0.00 % in | 0 genes |
| 12 | 144528 | chr6 | NT_167244.1 | 2893724-3038252 | 0.81 % in | 8 repeats | 0.00 % in | 0 genes |
| 13 | 119773 | chr6 | NT_167245.1 | 2605188-2724961 | 1.87 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 118264 | chr6 | NT_167244.1 | 3490019-3608283 | 5.54 % in | 17 repeats | 0.00 % in | 0 genes |
| 15 | 117359 | chr6 | NT_167247.1 | 1176334-1293693 | 1.13 % in | 1 repeats | 0.00 % in | 0 genes |
| 16 | 116523 | chr6 | NT_167246.1 | 3260337-3376860 | 1.34 % in | 11 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 487849 | chr15 | NT_037852.6 | 1398572-1886421 | 1 | 1 | AT_rich (1) | |||
| 2 | 403287 | chr6 | NT_167244.1 | 2357987-2761274 | 7 | 5 | L4 (2) | AluJb (2) | L1ME4a (1) | |
| 3 | 209699 | chr6 | NT_167244.1 | 4388443-4598142 | 6 | 5 | MER57-int (2) | (TTCC)n (1) | AluY (1) | |
| 4 | 183265 | chr6 | NT_167244.1 | 3787380-3970645 | 7 | 6 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 176214 | chr6 | NT_167244.1 | 3179922-3356136 | 5 | 4 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 6 | 172681 | chr6 | NT_167247.1 | 4421972-4594653 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 7 | 169919 | chr6 | NT_167249.1 | 2135698-2305617 | 17 | 10 | AluSx (4) | L1MB8 (3) | MLT1A (2) | |
| 8 | 166014 | chr6 | NT_167247.1 | 1562927-1728941 | 5 | 4 | MIR (2) | L1MEe (1) | (GGAA)n (1) | |
| 9 | 164450 | chr6 | NT_167248.1 | 516885-681335 | 3 | 3 | LTR7 (1) | L1PREC2 (1) | HERVH-int (1) | |
| 10 | 159161 | chr6 | NT_167244.1 | 2006736-2165897 | 7 | 5 | AluSx (3) | MIRb (1) | MIR (1) | |
| 11 | 152268 | chr9 | NT_008470.19 | 21692627-21844895 | 5 | 4 | L2 (2) | MIR3 (1) | LTR67B (1) | |
| 12 | 144528 | chr6 | NT_167244.1 | 2893724-3038252 | 8 | 7 | AluJo (2) | (TCC)n (1) | L1MC5 (1) | |
| 13 | 119773 | chr6 | NT_167245.1 | 2605188-2724961 | 4 | 3 | L2 (2) | MLT1E2 (1) | L2a (1) | |
| 14 | 118264 | chr6 | NT_167244.1 | 3490019-3608283 | 17 | 12 | MER102a (2) | L2a (2) | L1PA13 (2) | |
| 15 | 117359 | chr6 | NT_167247.1 | 1176334-1293693 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 16 | 116523 | chr6 | NT_167246.1 | 3260337-3376860 | 11 | 7 | AluSx (3) | MIRb (2) | L1MC5 (2) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 183265 | chr6 | NT_167244.1 | 3787380-3970645 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 176214 | chr6 | NT_167244.1 | 3179922-3356136 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 172681 | chr6 | NT_167247.1 | 4421972-4594653 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 166014 | chr6 | NT_167247.1 | 1562927-1728941 | LOC100421582 | tripartite_motif-containing_protein_26 |