| Enzyme: | CdpI | Longest uncut segments |
| Specificity: | GCGGAG | Repeats in uncut segments |
| Number of sites: | 461685 | Genes in uncut segments |
| Mean distance between sites: | 6197 base pairs | |
| Standard deviation: | 9382 base pairs | |
| Site density | 161.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494766 | chr15 | NT_037852.6 | 1396889-1891655 | 0.86 % in | 19 repeats | 0.00 % in | 0 genes |
| 2 | 404705 | chr6 | NT_167244.1 | 2359747-2764452 | 0.18 % in | 3 repeats | 0.00 % in | 0 genes |
| 3 | 324250 | chrY | NT_011875.12 | 8390592-8714842 | 82.21 % in | 49 repeats | 0.00 % in | 0 genes |
| 4 | 282482 | chr4 | NT_016354.19 | 32185824-32468306 | 55.20 % in | 417 repeats | 27.86 % in | 2 genes |
| 5 | 251793 | chr10 | NT_033985.7 | 1-251794 | 69.85 % in | 207 repeats | 6.68 % in | 29 genes |
| 6 | 223886 | chr19 | NT_011109.16 | 1-223887 | 99.80 % in | 58 repeats | 0.00 % in | 0 genes |
| 7 | 208488 | chr6 | NT_167244.1 | 4389907-4598395 | 0.28 % in | 3 repeats | 0.00 % in | 0 genes |
| 8 | 203845 | chr11 | NT_167190.1 | 21643-225488 | 99.85 % in | 56 repeats | 0.00 % in | 0 genes |
| 9 | 203456 | chrY | NT_011896.9 | 426635-630091 | 75.54 % in | 312 repeats | 0.00 % in | 0 genes |
| 10 | 202837 | chr6 | NT_007299.13 | 224257-427094 | 57.51 % in | 139 repeats | 0.00 % in | 0 genes |
| 11 | 199087 | chr6 | NT_167248.1 | 488876-687963 | 12.83 % in | 40 repeats | 0.00 % in | 0 genes |
| 12 | 196094 | chr6 | NT_167244.1 | 3788519-3984613 | 4.51 % in | 36 repeats | 0.00 % in | 0 genes |
| 13 | 184367 | chr7 | NT_007933.15 | 311033-495400 | 98.34 % in | 48 repeats | 0.00 % in | 0 genes |
| 14 | 175638 | chr6 | NT_167244.1 | 3179779-3355417 | 0.14 % in | 5 repeats | 0.00 % in | 0 genes |
| 15 | 175278 | chr6 | NT_167247.1 | 4420757-4596035 | 1.04 % in | 9 repeats | 0.00 % in | 0 genes |
| 16 | 172945 | chrX | NT_011669.17 | 253022-425967 | 88.87 % in | 114 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494766 | chr15 | NT_037852.6 | 1396889-1891655 | 19 | 16 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 404705 | chr6 | NT_167244.1 | 2359747-2764452 | 3 | 3 | L1MEg (1) | AluY (1) | AluSp (1) | |
| 3 | 324250 | chrY | NT_011875.12 | 8390592-8714842 | 49 | 22 | LTR12B (17) | AT_rich (4) | AluY (4) | |
| 4 | 282482 | chr4 | NT_016354.19 | 32185824-32468306 | 417 | 162 | AT_rich (35) | MIR (30) | L2a (16) | |
| 5 | 251793 | chr10 | NT_033985.7 | 1-251794 | 207 | 43 | ALR/Alpha (21) | HSATII (20) | (GAATG)n (17) | |
| 6 | 223886 | chr19 | NT_011109.16 | 1-223887 | 58 | 12 | ALR/Alpha (31) | L1PA3 (13) | L1PA4 (2) | |
| 7 | 208488 | chr6 | NT_167244.1 | 4389907-4598395 | 3 | 3 | AluSx (1) | AluSg/x (1) | AluJo (1) | |
| 8 | 203845 | chr11 | NT_167190.1 | 21643-225488 | 56 | 7 | ALR/Alpha (33) | L1PA4 (5) | L1PA3 (5) | |
| 9 | 203456 | chrY | NT_011896.9 | 426635-630091 | 312 | 130 | AT_rich (23) | AluY (9) | AluJb (9) | |
| 10 | 202837 | chr6 | NT_007299.13 | 224257-427094 | 139 | 76 | ALR/Alpha (16) | AT_rich (7) | MIRb (4) | |
| 11 | 199087 | chr6 | NT_167248.1 | 488876-687963 | 40 | 33 | AT_rich (4) | MER4D (2) | L1PA14 (2) | |
| 12 | 196094 | chr6 | NT_167244.1 | 3788519-3984613 | 36 | 28 | L2a (6) | MLT1H-int (2) | L1M5 (2) | |
| 13 | 184367 | chr7 | NT_007933.15 | 311033-495400 | 48 | 14 | ALR/Alpha (26) | AluY (4) | L1PA4 (3) | |
| 14 | 175638 | chr6 | NT_167244.1 | 3179779-3355417 | 5 | 3 | GC_rich (3) | (CCG)n (1) | AluSp (1) | |
| 15 | 175278 | chr6 | NT_167247.1 | 4420757-4596035 | 9 | 9 | (TTAAA)n (1) | MIR (1) | MER11A (1) | |
| 16 | 172945 | chrX | NT_011669.17 | 253022-425967 | 114 | 59 | ALR/Alpha (15) | AT_rich (6) | L1PA4 (4) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 282482 | chr4 | NT_016354.19 | 32185824-32468306 | LOC100421495 | |
| DKK2 | dickkopf-related_protein_2_precursor | |||||
| 5 | 251793 | chr10 | NT_033985.7 | 1-251794 | LOC100506968 | |
| LOC100506743 | ||||||
| LOC100506987 | ||||||
| LOC100507020 | hypothetical_protein_LOC100507020 | |||||
| LOC100507045 | ||||||
| LOC100507078 | ||||||
| LOC100507104 | ||||||
| LOC100507129 | ||||||
| LOC100507154 | hypothetical_protein_LOC100507154 | |||||
| LOC100507189 | ||||||
| LOC100507216 | ||||||
| LOC100507234 | ||||||
| LOC100507262 | ||||||
| LOC100507287 | ||||||
| LOC100507320 | ||||||
| LOC100507339 | hypothetical_protein_LOC100507339 | |||||
| LOC100507366 | ||||||
| LOC100507385 | ||||||
| LOC100507409 | ||||||
| LOC100507432 | ||||||
| LOC100507451 | ||||||
| LOC100507471 | ||||||
| LOC100507491 | hypothetical_protein_LOC100507491 | |||||
| LOC100507517 | ||||||
| LOC100507542 | hypothetical_protein_LOC100507542 | |||||
| LOC100507565 | ||||||
| LOC100507597 | ||||||
| LOC100506770 | ||||||
| LOC100507622 | ||||||