| Enzyme: | DrdV | Longest uncut segments |
| Specificity: | CATGNAC | Repeats in uncut segments |
| Number of sites: | 1467919 | Genes in uncut segments |
| Mean distance between sites: | 1949 base pairs | |
| Standard deviation: | 2210 base pairs | |
| Site density | 513.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 497402 | chr15 | NT_037852.6 | 1394771-1892173 | 0.99 % in | 23 repeats | 0.00 % in | 0 genes |
| 2 | 402242 | chr6 | NT_167244.1 | 2359810-2762052 | 0.04 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 209585 | chr6 | NT_167244.1 | 4389208-4598793 | 0.79 % in | 9 repeats | 0.00 % in | 0 genes |
| 4 | 188190 | chr6 | NT_167244.1 | 3784584-3972774 | 2.13 % in | 21 repeats | 1.54 % in | 1 genes |
| 5 | 180290 | chr6 | NT_167244.1 | 3180140-3360430 | 1.47 % in | 13 repeats | 2.40 % in | 2 genes |
| 6 | 174192 | chr6 | NT_167247.1 | 4420262-4594454 | 0.42 % in | 6 repeats | 100.00 % in | 1 genes |
| 7 | 171686 | chr6 | NT_167249.1 | 2137849-2309535 | 2.82 % in | 25 repeats | 0.00 % in | 0 genes |
| 8 | 166442 | chr6 | NT_167247.1 | 1561706-1728148 | 0.71 % in | 6 repeats | 0.75 % in | 1 genes |
| 9 | 163016 | chr6 | NT_167248.1 | 521202-684218 | 2.27 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 156553 | chr6 | NT_167244.1 | 2008637-2165190 | 0.32 % in | 3 repeats | 0.00 % in | 0 genes |
| 11 | 152903 | chr7 | NT_023603.5 | 40706-193609 | 100.00 % in | 1 repeats | 0.00 % in | 0 genes |
| 12 | 152220 | chr9 | NT_008470.19 | 21691181-21843401 | 0.88 % in | 5 repeats | 0.00 % in | 0 genes |
| 13 | 146831 | chr6 | NT_167244.1 | 2893509-3040340 | 2.11 % in | 19 repeats | 0.00 % in | 0 genes |
| 14 | 131485 | chr1 | NT_077389.3 | 259363-390848 | 97.15 % in | 65 repeats | 0.00 % in | 0 genes |
| 15 | 121556 | chr6 | NT_167245.1 | 2603497-2725053 | 2.96 % in | 9 repeats | 0.00 % in | 0 genes |
| 16 | 120601 | chr6 | NT_167246.1 | 3258849-3379450 | 2.20 % in | 16 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 497402 | chr15 | NT_037852.6 | 1394771-1892173 | 23 | 18 | L2a (3) | L1MDa (2) | L1M5 (2) | |
| 2 | 402242 | chr6 | NT_167244.1 | 2359810-2762052 | 1 | 1 | AluSp (1) | |||
| 3 | 209585 | chr6 | NT_167244.1 | 4389208-4598793 | 9 | 7 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 188190 | chr6 | NT_167244.1 | 3784584-3972774 | 21 | 15 | L2a (3) | MLT1H-int (2) | AT_rich (2) | |
| 5 | 180290 | chr6 | NT_167244.1 | 3180140-3360430 | 13 | 8 | AluSx (3) | MIRb (2) | L2c (2) | |
| 6 | 174192 | chr6 | NT_167247.1 | 4420262-4594454 | 6 | 6 | MIR (1) | MER11A (1) | L2b (1) | |
| 7 | 171686 | chr6 | NT_167249.1 | 2137849-2309535 | 25 | 12 | Charlie2b (6) | AluSx (4) | L1MB8 (3) | |
| 8 | 166442 | chr6 | NT_167247.1 | 1561706-1728148 | 6 | 5 | MIR (2) | L1MC3 (1) | (GGAA)n (1) | |
| 9 | 163016 | chr6 | NT_167248.1 | 521202-684218 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 156553 | chr6 | NT_167244.1 | 2008637-2165190 | 3 | 3 | MIRb (1) | MIR (1) | AluSx (1) | |
| 11 | 152903 | chr7 | NT_023603.5 | 40706-193609 | 1 | 1 | ALR/Alpha (1) | |||
| 12 | 152220 | chr9 | NT_008470.19 | 21691181-21843401 | 5 | 4 | LTR67B (2) | MSTA (1) | L1M5 (1) | |
| 13 | 146831 | chr6 | NT_167244.1 | 2893509-3040340 | 19 | 10 | L1MC5 (6) | AluSc (3) | AluY (2) | |
| 14 | 131485 | chr1 | NT_077389.3 | 259363-390848 | 65 | 12 | ALR/Alpha (52) | MLT1J (2) | L1MB1 (2) | |
| 15 | 121556 | chr6 | NT_167245.1 | 2603497-2725053 | 9 | 7 | MLT1N2 (2) | L2 (2) | MLT1E2 (1) | |
| 16 | 120601 | chr6 | NT_167246.1 | 3258849-3379450 | 16 | 11 | L1MC5 (3) | AluSx (3) | MIRb (2) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 188190 | chr6 | NT_167244.1 | 3784584-3972774 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 180290 | chr6 | NT_167244.1 | 3180140-3360430 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 174192 | chr6 | NT_167247.1 | 4420262-4594454 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 166442 | chr6 | NT_167247.1 | 1561706-1728148 | LOC100421582 | tripartite_motif-containing_protein_26 |