| Enzyme: | EcoO109I | Longest uncut segments |
| Specificity: | RGGNCCY | Repeats in uncut segments |
| Number of sites: | 2320926 | Genes in uncut segments |
| Mean distance between sites: | 1232 base pairs | |
| Standard deviation: | 1879 base pairs | |
| Site density | 811.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 489004 | chr15 | NT_037852.6 | 1396667-1885671 | 0.18 % in | 6 repeats | 0.00 % in | 0 genes |
| 2 | 402017 | chr6 | NT_167244.1 | 2359503-2761520 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 209499 | chr6 | NT_167244.1 | 4389631-4599130 | 0.71 % in | 8 repeats | 0.00 % in | 0 genes |
| 4 | 185731 | chrY | NT_011875.12 | 8536349-8722080 | 72.35 % in | 28 repeats | 0.43 % in | 1 genes |
| 5 | 183968 | chr6 | NT_167244.1 | 3787656-3971624 | 0.99 % in | 10 repeats | 0.00 % in | 0 genes |
| 6 | 175987 | chr6 | NT_167244.1 | 3180070-3356057 | 0.23 % in | 5 repeats | 0.09 % in | 1 genes |
| 7 | 173502 | chr6 | NT_167247.1 | 4421892-4595394 | 0.66 % in | 2 repeats | 100.00 % in | 1 genes |
| 8 | 170082 | chr6 | NT_167249.1 | 2136527-2306609 | 2.40 % in | 17 repeats | 0.00 % in | 0 genes |
| 9 | 159618 | chr6 | NT_167248.1 | 521877-681495 | 0.19 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 158491 | chr7 | NT_023603.5 | 33360-191851 | 100.00 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 151760 | chr9 | NT_008470.19 | 21691916-21843676 | 0.67 % in | 5 repeats | 0.00 % in | 0 genes |
| 12 | 149296 | chr6 | NT_167244.1 | 2891709-3041005 | 3.24 % in | 25 repeats | 0.00 % in | 0 genes |
| 13 | 119937 | chr6 | NT_167245.1 | 2604375-2724312 | 1.66 % in | 6 repeats | 0.00 % in | 0 genes |
| 14 | 117650 | chr5 | NW_003315917.1 | 1145800-1263450 | 6.30 % in | 31 repeats | 0.00 % in | 0 genes |
| 15 | 114888 | chr6 | NT_167247.1 | 1177471-1292359 | 0.17 % in | 1 repeats | 0.00 % in | 0 genes |
| 16 | 114161 | chr6 | NT_167246.1 | 3261229-3375390 | 0.41 % in | 3 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 489004 | chr15 | NT_037852.6 | 1396667-1885671 | 6 | 6 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 402017 | chr6 | NT_167244.1 | 2359503-2761520 | 1 | 1 | AluSp (1) | |||
| 3 | 209499 | chr6 | NT_167244.1 | 4389631-4599130 | 8 | 7 | AluSx (2) | (TTCC)n (1) | MER57-int (1) | |
| 4 | 185731 | chrY | NT_011875.12 | 8536349-8722080 | 28 | 13 | LTR12B (10) | L1PA16 (6) | L1PA8 (2) | |
| 5 | 183968 | chr6 | NT_167244.1 | 3787656-3971624 | 10 | 9 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 6 | 175987 | chr6 | NT_167244.1 | 3180070-3356057 | 5 | 4 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 7 | 173502 | chr6 | NT_167247.1 | 4421892-4595394 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 8 | 170082 | chr6 | NT_167249.1 | 2136527-2306609 | 17 | 9 | Charlie2b (4) | AluSx (4) | L1MB8 (3) | |
| 9 | 159618 | chr6 | NT_167248.1 | 521877-681495 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 158491 | chr7 | NT_023603.5 | 33360-191851 | 2 | 2 | L1PA2 (1) | ALR/Alpha (1) | ||
| 11 | 151760 | chr9 | NT_008470.19 | 21691916-21843676 | 5 | 4 | LTR67B (2) | MSTA (1) | MIR3 (1) | |
| 12 | 149296 | chr6 | NT_167244.1 | 2891709-3041005 | 25 | 13 | L1MC5 (6) | AluY (3) | AluSc (3) | |
| 13 | 119937 | chr6 | NT_167245.1 | 2604375-2724312 | 6 | 6 | MLT1N2 (1) | MLT1E2 (1) | MER5B (1) | |
| 14 | 117650 | chr5 | NW_003315917.1 | 1145800-1263450 | 31 | 20 | AT_rich (6) | AluSg (3) | Tigger3c (2) | |
| 15 | 114888 | chr6 | NT_167247.1 | 1177471-1292359 | 1 | 1 | ERV3-16A3_I-int (1) | |||
| 16 | 114161 | chr6 | NT_167246.1 | 3261229-3375390 | 3 | 2 | MIRb (2) | AluSx (1) | ||
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 185731 | chrY | NT_011875.12 | 8536349-8722080 | ZNF884P | |
| 6 | 175987 | chr6 | NT_167244.1 | 3180070-3356057 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 173502 | chr6 | NT_167247.1 | 4421892-4595394 | LOC100507722 | hypothetical_protein_LOC100507722 |