| Enzyme: | Bsu36I | Longest uncut segments |
| Specificity: | CCTNAGG | Repeats in uncut segments |
| Number of sites: | 938521 | Genes in uncut segments |
| Mean distance between sites: | 3048 base pairs | |
| Standard deviation: | 3496 base pairs | |
| Site density | 328.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 508316 | chr15 | NT_037852.6 | 1396143-1904459 | 1.37 % in | 38 repeats | 1.96 % in | 1 genes |
| 2 | 406268 | chr6 | NT_167244.1 | 2357112-2763380 | 0.60 % in | 10 repeats | 0.00 % in | 0 genes |
| 3 | 214720 | chr6 | NT_167244.1 | 4388201-4602921 | 2.68 % in | 15 repeats | 0.00 % in | 0 genes |
| 4 | 183484 | chr6 | NT_167244.1 | 3789376-3972860 | 1.14 % in | 12 repeats | 0.00 % in | 0 genes |
| 5 | 182633 | chr6 | NT_167248.1 | 506482-689115 | 10.72 % in | 18 repeats | 0.48 % in | 1 genes |
| 6 | 179014 | chr6 | NT_167244.1 | 3177047-3356061 | 0.98 % in | 19 repeats | 1.78 % in | 1 genes |
| 7 | 172878 | chr6 | NT_167247.1 | 4421887-4594765 | 0.30 % in | 2 repeats | 100.00 % in | 1 genes |
| 8 | 167511 | chr6 | NT_167249.1 | 2136039-2303550 | 1.11 % in | 9 repeats | 0.00 % in | 0 genes |
| 9 | 166229 | chr6 | NT_167247.1 | 1561181-1727410 | 0.73 % in | 5 repeats | 0.00 % in | 0 genes |
| 10 | 162051 | chrY | NT_011875.12 | 8497594-8659645 | 69.07 % in | 9 repeats | 0.00 % in | 0 genes |
| 11 | 157086 | chr6 | NT_167244.1 | 2008727-2165813 | 0.26 % in | 3 repeats | 0.00 % in | 0 genes |
| 12 | 154957 | chr7 | NT_023603.5 | 40976-195933 | 100.00 % in | 3 repeats | 0.00 % in | 0 genes |
| 13 | 154630 | chr9 | NT_008470.19 | 21690159-21844789 | 1.71 % in | 10 repeats | 0.00 % in | 0 genes |
| 14 | 146573 | chr6 | NT_167244.1 | 2892356-3038929 | 1.84 % in | 12 repeats | 0.00 % in | 0 genes |
| 15 | 126273 | chr1 | NT_077389.3 | 264830-391103 | 99.54 % in | 54 repeats | 0.00 % in | 0 genes |
| 16 | 125450 | chr10 | NT_008705.16 | 38711947-38837397 | 27.11 % in | 221 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 508316 | chr15 | NT_037852.6 | 1396143-1904459 | 38 | 26 | AT_rich (5) | (TA)n (3) | L2a (3) | |
| 2 | 406268 | chr6 | NT_167244.1 | 2357112-2763380 | 10 | 8 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 214720 | chr6 | NT_167244.1 | 4388201-4602921 | 15 | 11 | MER57-int (2) | HERVH-int (2) | AluSx (2) | |
| 4 | 183484 | chr6 | NT_167244.1 | 3789376-3972860 | 12 | 11 | MLT1H-int (2) | (TA)n (1) | MLT1H (1) | |
| 5 | 182633 | chr6 | NT_167248.1 | 506482-689115 | 18 | 15 | MER4D (2) | L1PA14 (2) | AT_rich (2) | |
| 6 | 179014 | chr6 | NT_167244.1 | 3177047-3356061 | 19 | 13 | GC_rich (3) | AluSx (3) | MER44B (2) | |
| 7 | 172878 | chr6 | NT_167247.1 | 4421887-4594765 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 8 | 167511 | chr6 | NT_167249.1 | 2136039-2303550 | 9 | 8 | AluSx (2) | MLT1A (1) | MamGypLTR1b (1) | |
| 9 | 166229 | chr6 | NT_167247.1 | 1561181-1727410 | 5 | 5 | MIRc (1) | MIR (1) | L1MC3 (1) | |
| 10 | 162051 | chrY | NT_011875.12 | 8497594-8659645 | 9 | 2 | LTR12B (8) | LTR12D (1) | ||
| 11 | 157086 | chr6 | NT_167244.1 | 2008727-2165813 | 3 | 3 | MIRb (1) | MIR (1) | AluSx (1) | |
| 12 | 154957 | chr7 | NT_023603.5 | 40976-195933 | 3 | 2 | L1PA2 (2) | ALR/Alpha (1) | ||
| 13 | 154630 | chr9 | NT_008470.19 | 21690159-21844789 | 10 | 7 | LTR67B (2) | L2 (2) | L1M4b (2) | |
| 14 | 146573 | chr6 | NT_167244.1 | 2892356-3038929 | 12 | 8 | L1MC5 (2) | AluY (2) | AluSc (2) | |
| 15 | 126273 | chr1 | NT_077389.3 | 264830-391103 | 54 | 3 | ALR/Alpha (52) | MLT1J (1) | L1HS (1) | |
| 16 | 125450 | chr10 | NT_008705.16 | 38711947-38837397 | 221 | 35 | GA-rich (24) | (GAATG)n (22) | (AAATG)n (22) | |
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 508316 | chr15 | NT_037852.6 | 1396143-1904459 | LOC100418897 | |
| 5 | 182633 | chr6 | NT_167248.1 | 506482-689115 | OR12D1P | |
| 6 | 179014 | chr6 | NT_167244.1 | 3177047-3356061 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 7 | 172878 | chr6 | NT_167247.1 | 4421887-4594765 | LOC100507722 | hypothetical_protein_LOC100507722 |