| Enzyme: | NmeBI | Longest uncut segments |
| Specificity: | GACGC | Repeats in uncut segments |
| Number of sites: | 560542 | Genes in uncut segments |
| Mean distance between sites: | 5104 base pairs | |
| Standard deviation: | 7510 base pairs | |
| Site density | 195.9 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490469 | chr15 | NT_037852.6 | 1396654-1887123 | 0.20 % in | 8 repeats | 0.00 % in | 0 genes |
| 2 | 409436 | chr6 | NT_167244.1 | 2351817-2761253 | 1.41 % in | 28 repeats | 0.00 % in | 0 genes |
| 3 | 260907 | chr6 | NT_167244.1 | 2001442-2262349 | 3.79 % in | 45 repeats | 4.20 % in | 3 genes |
| 4 | 217458 | chr6 | NT_167244.1 | 4385100-4602558 | 3.37 % in | 20 repeats | 0.00 % in | 0 genes |
| 5 | 216295 | chr3 | NT_022517.18 | 35207366-35423661 | 52.80 % in | 362 repeats | 2.20 % in | 1 genes |
| 6 | 215083 | chr6 | NT_167248.1 | 503586-718669 | 15.93 % in | 68 repeats | 2.00 % in | 3 genes |
| 7 | 192442 | chr6 | NT_167244.1 | 3171648-3364090 | 4.53 % in | 49 repeats | 8.57 % in | 2 genes |
| 8 | 191933 | chr6 | NT_167247.1 | 1562770-1754703 | 9.12 % in | 59 repeats | 4.32 % in | 2 genes |
| 9 | 186621 | chr6 | NT_167244.1 | 3788050-3974671 | 2.25 % in | 20 repeats | 0.00 % in | 0 genes |
| 10 | 186202 | chr6 | NT_167247.1 | 4410771-4596973 | 2.68 % in | 18 repeats | 0.00 % in | 0 genes |
| 11 | 179741 | chr6 | NT_167249.1 | 2130063-2309804 | 5.85 % in | 48 repeats | 0.00 % in | 0 genes |
| 12 | 166672 | chr9 | NT_008470.19 | 21692378-21859050 | 3.47 % in | 22 repeats | 0.00 % in | 0 genes |
| 13 | 152399 | chr6 | NT_167244.1 | 2889921-3042320 | 4.13 % in | 33 repeats | 0.00 % in | 0 genes |
| 14 | 150743 | chr6 | NT_167244.1 | 568119-718862 | 15.11 % in | 77 repeats | 0.00 % in | 0 genes |
| 15 | 137475 | chr6 | NT_167244.1 | 3482361-3619836 | 10.51 % in | 54 repeats | 0.00 % in | 0 genes |
| 16 | 134029 | chr6 | NT_007592.15 | 55214620-55348649 | 37.92 % in | 220 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490469 | chr15 | NT_037852.6 | 1396654-1887123 | 8 | 8 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 409436 | chr6 | NT_167244.1 | 2351817-2761253 | 28 | 19 | AluJb (4) | L1ME4a (3) | MLT2D (2) | |
| 3 | 260907 | chr6 | NT_167244.1 | 2001442-2262349 | 45 | 28 | AluSx (5) | MIRb (3) | L1MEe (3) | |
| 4 | 217458 | chr6 | NT_167244.1 | 4385100-4602558 | 20 | 13 | MER57-int (3) | AluSx (3) | HERVH-int (2) | |
| 5 | 216295 | chr3 | NT_022517.18 | 35207366-35423661 | 362 | 129 | AT_rich (33) | MIRb (16) | MIRc (13) | |
| 6 | 215083 | chr6 | NT_167248.1 | 503586-718669 | 68 | 50 | AT_rich (7) | L2c (3) | L2b (3) | |
| 7 | 192442 | chr6 | NT_167244.1 | 3171648-3364090 | 49 | 24 | AluSx (9) | L1MC5 (4) | L1MB3 (4) | |
| 8 | 191933 | chr6 | NT_167247.1 | 1562770-1754703 | 59 | 35 | L1MEf (6) | MER21-int (4) | L1PB2 (4) | |
| 9 | 186621 | chr6 | NT_167244.1 | 3788050-3974671 | 20 | 17 | MLT1H-int (2) | L2a (2) | AT_rich (2) | |
| 10 | 186202 | chr6 | NT_167247.1 | 4410771-4596973 | 18 | 15 | L2b (3) | MIRb (2) | (TTAAA)n (1) | |
| 11 | 179741 | chr6 | NT_167249.1 | 2130063-2309804 | 48 | 23 | Charlie2b (6) | AluSx (6) | MamGypLTR1b (3) | |
| 12 | 166672 | chr9 | NT_008470.19 | 21692378-21859050 | 22 | 18 | MIRb (2) | L2 (2) | HAL1 (2) | |
| 13 | 152399 | chr6 | NT_167244.1 | 2889921-3042320 | 33 | 16 | L1MC5 (6) | AluY (5) | AluSc (3) | |
| 14 | 150743 | chr6 | NT_167244.1 | 568119-718862 | 77 | 50 | AT_rich (6) | L2b (5) | MIRc (3) | |
| 15 | 137475 | chr6 | NT_167244.1 | 3482361-3619836 | 54 | 26 | AluSx (8) | AluSg (6) | L1M2 (4) | |
| 16 | 134029 | chr6 | NT_007592.15 | 55214620-55348649 | 220 | 88 | AT_rich (28) | L2c (11) | L1M5 (11) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 260907 | chr6 | NT_167244.1 | 2001442-2262349 | LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 |
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 5 | 216295 | chr3 | NT_022517.18 | 35207366-35423661 | KRT8P18 | |
| 6 | 215083 | chr6 | NT_167248.1 | 503586-718669 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||
| OR10C1 | olfactory_receptor_10C1 | |||||
| 7 | 192442 | chr6 | NT_167244.1 | 3171648-3364090 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 8 | 191933 | chr6 | NT_167247.1 | 1562770-1754703 | LOC100421582 | tripartite_motif-containing_protein_26 |
| LOC100507720 | ||||||