| Enzyme: | SpoDI | Longest uncut segments |
| Specificity: | GCGGRAG | Repeats in uncut segments |
| Number of sites: | 202152 | Genes in uncut segments |
| Mean distance between sites: | 14154 base pairs | |
| Standard deviation: | 21809 base pairs | |
| Site density | 70.6 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 522665 | chr15 | NT_037852.6 | 1380920-1903585 | 3.76 % in | 73 repeats | 1.91 % in | 1 genes |
| 2 | 492552 | chrY | NT_011875.12 | 8302390-8794942 | 80.68 % in | 293 repeats | 0.66 % in | 4 genes |
| 3 | 480351 | chr6 | NT_025741.15 | 32127660-32608011 | 46.38 % in | 702 repeats | 74.94 % in | 3 genes |
| 4 | 416216 | chr6 | NT_167244.1 | 2349240-2765456 | 2.11 % in | 38 repeats | 0.00 % in | 0 genes |
| 5 | 394410 | chr19 | NT_011109.16 | 1-394411 | 99.77 % in | 99 repeats | 0.00 % in | 0 genes |
| 6 | 388860 | chr4 | NT_022778.16 | 10858628-11247488 | 46.66 % in | 615 repeats | 33.08 % in | 10 genes |
| 7 | 384161 | chr14 | NT_026437.12 | 8813191-9197352 | 56.23 % in | 598 repeats | 85.70 % in | 1 genes |
| 8 | 356015 | chrX | NT_011651.17 | 4428142-4784157 | 82.77 % in | 544 repeats | 0.00 % in | 0 genes |
| 9 | 355802 | chr2 | NT_022184.15 | 63537603-63893405 | 55.26 % in | 540 repeats | 0.00 % in | 0 genes |
| 10 | 349871 | chr1 | NT_032977.9 | 50852879-51202750 | 51.16 % in | 520 repeats | 0.00 % in | 0 genes |
| 11 | 347750 | chr11 | NT_167190.1 | 1-347751 | 96.64 % in | 112 repeats | 0.00 % in | 0 genes |
| 12 | 336190 | chrY | NT_011875.12 | 6855410-7191600 | 53.69 % in | 482 repeats | 0.00 % in | 0 genes |
| 13 | 334746 | chr11 | NT_033899.8 | 2253600-2588346 | 53.95 % in | 480 repeats | 0.00 % in | 0 genes |
| 14 | 333427 | chr2 | NT_005403.17 | 6297227-6630654 | 55.41 % in | 475 repeats | 0.00 % in | 0 genes |
| 15 | 330571 | chr2 | NT_005403.17 | 13474317-13804888 | 39.39 % in | 448 repeats | 0.00 % in | 0 genes |
| 16 | 324053 | chr6 | NT_167244.1 | 437347-761400 | 20.53 % in | 199 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 522665 | chr15 | NT_037852.6 | 1380920-1903585 | 73 | 40 | Tigger2 (6) | L1MDa (6) | AT_rich (5) | |
| 2 | 492552 | chrY | NT_011875.12 | 8302390-8794942 | 293 | 109 | AT_rich (24) | LTR12B (17) | AluY (14) | |
| 3 | 480351 | chr6 | NT_025741.15 | 32127660-32608011 | 702 | 216 | AT_rich (69) | L2a (34) | MIR (27) | |
| 4 | 416216 | chr6 | NT_167244.1 | 2349240-2765456 | 38 | 26 | AluJb (4) | L1ME4a (3) | AluSx (3) | |
| 5 | 394410 | chr19 | NT_011109.16 | 1-394411 | 99 | 19 | ALR/Alpha (57) | L1PA3 (14) | L1PA4 (7) | |
| 6 | 388860 | chr4 | NT_022778.16 | 10858628-11247488 | 615 | 185 | AT_rich (95) | L2a (24) | MIRb (22) | |
| 7 | 384161 | chr14 | NT_026437.12 | 8813191-9197352 | 598 | 191 | AT_rich (71) | L2a (21) | MIR (18) | |
| 8 | 356015 | chrX | NT_011651.17 | 4428142-4784157 | 544 | 183 | AT_rich (26) | (TA)n (16) | AluSx (15) | |
| 9 | 355802 | chr2 | NT_022184.15 | 63537603-63893405 | 540 | 178 | AT_rich (26) | L2a (18) | AluSx (17) | |
| 10 | 349871 | chr1 | NT_032977.9 | 50852879-51202750 | 520 | 186 | AT_rich (57) | MIRb (19) | MIR (18) | |
| 11 | 347750 | chr11 | NT_167190.1 | 1-347751 | 112 | 29 | ALR/Alpha (55) | L1PA4 (7) | L1P1 (6) | |
| 12 | 336190 | chrY | NT_011875.12 | 6855410-7191600 | 482 | 113 | AT_rich (38) | AluSx (36) | HUERS-P3b-int (20) | |
| 13 | 334746 | chr11 | NT_033899.8 | 2253600-2588346 | 480 | 174 | AT_rich (59) | L2a (16) | MIR (15) | |
| 14 | 333427 | chr2 | NT_005403.17 | 6297227-6630654 | 475 | 176 | AT_rich (58) | AluSx (15) | MIR (11) | |
| 15 | 330571 | chr2 | NT_005403.17 | 13474317-13804888 | 448 | 160 | AT_rich (42) | MIRb (21) | MIR (20) | |
| 16 | 324053 | chr6 | NT_167244.1 | 437347-761400 | 199 | 94 | AT_rich (22) | L1PA7 (6) | L1MEf (6) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 522665 | chr15 | NT_037852.6 | 1380920-1903585 | LOC100418897 | |
| 2 | 492552 | chrY | NT_011875.12 | 8302390-8794942 | RCC2P2 | |
| ZNF886P | ||||||
| ZNF884P | ||||||
| ZNF885P | ||||||
| 3 | 480351 | chr6 | NT_025741.15 | 32127660-32608011 | LOC100421513 | |
| MRPS17P5 | protein_THEMIS_isoform_3 | |||||
| PTPRK | receptor-type_tyrosine-protein_phosphatase_kappa_isoform_b | |||||
| 6 | 388860 | chr4 | NT_022778.16 | 10858628-11247488 | SULT1D1P | |
| SULT1E1 | estrogen_sulfotransferase | |||||
| CSN1S1 | alpha-S1-casein_isoform_2 | |||||
| CSN2 | beta-casein_precursor | |||||
| STATH | statherin_isoform_b | |||||
| HTN3 | histatin-3 | |||||
| HTN1 | histatin-1_precursor | |||||
| CSN1S2A | casein_alpha_s2-like_A | |||||
| CSN1S2B | casein_alpha_s2-like_B | |||||
| C4orf40 | hypothetical_protein_LOC401137_precursor | |||||
| 7 | 384161 | chr14 | NT_026437.12 | 8813191-9197352 | LOC100505967 | hypothetical_LOC100505967,_transcript_variant_3 |