| Enzyme: | Bme1580I | Longest uncut segments |
| Specificity: | GKGCMC | Repeats in uncut segments |
| Number of sites: | 1980555 | Genes in uncut segments |
| Mean distance between sites: | 1444 base pairs | |
| Standard deviation: | 1899 base pairs | |
| Site density | 692.2 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494116 | chr15 | NT_037852.6 | 1397287-1891403 | 0.76 % in | 17 repeats | 0.00 % in | 0 genes |
| 2 | 404388 | chr6 | NT_167244.1 | 2357133-2761521 | 0.55 % in | 9 repeats | 0.00 % in | 0 genes |
| 3 | 211309 | chr6 | NT_167244.1 | 4388443-4599752 | 1.38 % in | 12 repeats | 0.00 % in | 0 genes |
| 4 | 184299 | chr6 | NT_167244.1 | 3787279-3971578 | 0.96 % in | 10 repeats | 0.12 % in | 1 genes |
| 5 | 175288 | chr6 | NT_167244.1 | 3180070-3355358 | 0.09 % in | 4 repeats | 0.09 % in | 1 genes |
| 6 | 172796 | chr6 | NT_167247.1 | 4421857-4594653 | 0.23 % in | 2 repeats | 100.00 % in | 1 genes |
| 7 | 168582 | chr6 | NT_167249.1 | 2136128-2304710 | 1.52 % in | 14 repeats | 0.00 % in | 0 genes |
| 8 | 164328 | chr6 | NT_167247.1 | 1562903-1727231 | 0.01 % in | 1 repeats | 0.03 % in | 1 genes |
| 9 | 163318 | chr6 | NT_167248.1 | 520515-683833 | 2.45 % in | 2 repeats | 0.00 % in | 0 genes |
| 10 | 151609 | chr9 | NT_008470.19 | 21692392-21844001 | 0.48 % in | 3 repeats | 0.00 % in | 0 genes |
| 11 | 146962 | chr6 | NT_167244.1 | 2892551-3039513 | 2.10 % in | 16 repeats | 0.00 % in | 0 genes |
| 12 | 134942 | chrY | NT_011875.12 | 8518392-8653334 | 62.89 % in | 6 repeats | 0.00 % in | 0 genes |
| 13 | 127581 | chr1 | NT_077389.3 | 263997-391578 | 99.17 % in | 57 repeats | 0.00 % in | 0 genes |
| 14 | 119203 | chr6 | NT_167245.1 | 2605070-2724273 | 1.36 % in | 3 repeats | 0.00 % in | 0 genes |
| 15 | 116173 | chr6 | NT_167247.1 | 1176165-1292338 | 1.29 % in | 2 repeats | 0.00 % in | 0 genes |
| 16 | 115450 | chr6 | NT_167246.1 | 3259651-3375101 | 0.49 % in | 3 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494116 | chr15 | NT_037852.6 | 1397287-1891403 | 17 | 14 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 404388 | chr6 | NT_167244.1 | 2357133-2761521 | 9 | 7 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 211309 | chr6 | NT_167244.1 | 4388443-4599752 | 12 | 10 | MER57-int (2) | AluSx (2) | (TTCC)n (1) | |
| 4 | 184299 | chr6 | NT_167244.1 | 3787279-3971578 | 10 | 9 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 5 | 175288 | chr6 | NT_167244.1 | 3180070-3355358 | 4 | 3 | GC_rich (2) | (CCG)n (1) | AluSp (1) | |
| 6 | 172796 | chr6 | NT_167247.1 | 4421857-4594653 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 7 | 168582 | chr6 | NT_167249.1 | 2136128-2304710 | 14 | 9 | AluSx (4) | L1MB8 (3) | MLT1A (1) | |
| 8 | 164328 | chr6 | NT_167247.1 | 1562903-1727231 | 1 | 1 | MIR (1) | |||
| 9 | 163318 | chr6 | NT_167248.1 | 520515-683833 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 10 | 151609 | chr9 | NT_008470.19 | 21692392-21844001 | 3 | 3 | MIR3 (1) | LTR67B (1) | L1M5 (1) | |
| 11 | 146962 | chr6 | NT_167244.1 | 2892551-3039513 | 16 | 9 | L1MC5 (4) | AluSc (3) | AluY (2) | |
| 12 | 134942 | chrY | NT_011875.12 | 8518392-8653334 | 6 | 1 | LTR12B (6) | |||
| 13 | 127581 | chr1 | NT_077389.3 | 263997-391578 | 57 | 5 | ALR/Alpha (52) | MLT1J (2) | L2 (1) | |
| 14 | 119203 | chr6 | NT_167245.1 | 2605070-2724273 | 3 | 3 | MLT1E2 (1) | L2a (1) | L2 (1) | |
| 15 | 116173 | chr6 | NT_167247.1 | 1176165-1292338 | 2 | 1 | ERV3-16A3_I-int (2) | |||
| 16 | 115450 | chr6 | NT_167246.1 | 3259651-3375101 | 3 | 3 | MIRb (1) | MIR3 (1) | AluSx (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 184299 | chr6 | NT_167244.1 | 3787279-3971578 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 175288 | chr6 | NT_167244.1 | 3180070-3355358 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 172796 | chr6 | NT_167247.1 | 4421857-4594653 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 164328 | chr6 | NT_167247.1 | 1562903-1727231 | LOC100421582 | tripartite_motif-containing_protein_26 |