| Enzyme: | XbaI | Longest uncut segments |
| Specificity: | TCTAGA | Repeats in uncut segments |
| Number of sites: | 799219 | Genes in uncut segments |
| Mean distance between sites: | 3580 base pairs | |
| Standard deviation: | 3831 base pairs | |
| Site density | 279.3 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490044 | chr15 | NT_037852.6 | 1398728-1888772 | 0.26 % in | 7 repeats | 0.00 % in | 0 genes |
| 2 | 405852 | chr6 | NT_167244.1 | 2357025-2762877 | 0.60 % in | 10 repeats | 0.00 % in | 0 genes |
| 3 | 249554 | chr6 | NT_167244.1 | 3172652-3422206 | 5.72 % in | 71 repeats | 8.03 % in | 2 genes |
| 4 | 208757 | chr6 | NT_167244.1 | 4389675-4598432 | 0.40 % in | 5 repeats | 0.00 % in | 0 genes |
| 5 | 187974 | chr6 | NT_167244.1 | 3788046-3976020 | 2.50 % in | 22 repeats | 0.00 % in | 0 genes |
| 6 | 180090 | chr6 | NT_167247.1 | 4415653-4595743 | 1.37 % in | 11 repeats | 99.19 % in | 1 genes |
| 7 | 177709 | chr6 | NT_167247.1 | 1550145-1727854 | 4.46 % in | 40 repeats | 7.21 % in | 1 genes |
| 8 | 173459 | chr6 | NT_167249.1 | 2131195-2304654 | 3.56 % in | 27 repeats | 0.00 % in | 0 genes |
| 9 | 164684 | chr4 | NT_006316.16 | 392999-557683 | 5.36 % in | 59 repeats | 0.00 % in | 0 genes |
| 10 | 163349 | chr6 | NT_167246.1 | 3245146-3408495 | 10.28 % in | 88 repeats | 0.00 % in | 0 genes |
| 11 | 162412 | chr6 | NT_167248.1 | 520097-682509 | 1.91 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 159651 | chr6 | NT_167244.1 | 2007234-2166885 | 0.91 % in | 7 repeats | 0.00 % in | 0 genes |
| 13 | 152066 | chr9 | NT_008470.19 | 21693102-21845168 | 0.36 % in | 4 repeats | 0.00 % in | 0 genes |
| 14 | 146957 | chr6 | NT_167244.1 | 2891593-3038550 | 2.08 % in | 14 repeats | 0.00 % in | 0 genes |
| 15 | 146269 | chr7 | NT_023603.5 | 41109-187378 | 100.00 % in | 1 repeats | 0.00 % in | 0 genes |
| 16 | 132040 | chr6 | NT_167244.1 | 1817664-1949704 | 11.68 % in | 68 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490044 | chr15 | NT_037852.6 | 1398728-1888772 | 7 | 5 | L2a (3) | (TA)n (1) | MLT1L (1) | |
| 2 | 405852 | chr6 | NT_167244.1 | 2357025-2762877 | 10 | 8 | L4 (2) | AluJb (2) | MER8 (1) | |
| 3 | 249554 | chr6 | NT_167244.1 | 3172652-3422206 | 71 | 28 | AluSx (12) | MIR (4) | L1MC5 (4) | |
| 4 | 208757 | chr6 | NT_167244.1 | 4389675-4598432 | 5 | 5 | (TTCC)n (1) | MER57-int (1) | AluSx (1) | |
| 5 | 187974 | chr6 | NT_167244.1 | 3788046-3976020 | 22 | 18 | L2a (3) | MLT1H-int (2) | AT_rich (2) | |
| 6 | 180090 | chr6 | NT_167247.1 | 4415653-4595743 | 11 | 11 | (TTAAA)n (1) | MIRc (1) | MIRb (1) | |
| 7 | 177709 | chr6 | NT_167247.1 | 1550145-1727854 | 40 | 26 | MIRc (3) | MIR3 (3) | L2c (3) | |
| 8 | 173459 | chr6 | NT_167249.1 | 2131195-2304654 | 27 | 15 | AluSx (5) | L1MB8 (3) | AluJo (3) | |
| 9 | 164684 | chr4 | NT_006316.16 | 392999-557683 | 59 | 7 | (CA)n (46) | L1M4 (7) | L1PA10 (2) | |
| 10 | 163349 | chr6 | NT_167246.1 | 3245146-3408495 | 88 | 38 | AluSx (15) | MIR (6) | MIRb (5) | |
| 11 | 162412 | chr6 | NT_167248.1 | 520097-682509 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 12 | 159651 | chr6 | NT_167244.1 | 2007234-2166885 | 7 | 6 | AluSx (2) | MIRb (1) | MIR (1) | |
| 13 | 152066 | chr9 | NT_008470.19 | 21693102-21845168 | 4 | 3 | L2 (2) | MIR3 (1) | L1M5 (1) | |
| 14 | 146957 | chr6 | NT_167244.1 | 2891593-3038550 | 14 | 10 | AluJo (3) | L1MC5 (2) | AluY (2) | |
| 15 | 146269 | chr7 | NT_023603.5 | 41109-187378 | 1 | 1 | ALR/Alpha (1) | |||
| 16 | 132040 | chr6 | NT_167244.1 | 1817664-1949704 | 68 | 26 | AluSx (9) | L1MC4 (8) | L2c (6) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 249554 | chr6 | NT_167244.1 | 3172652-3422206 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 6 | 180090 | chr6 | NT_167247.1 | 4415653-4595743 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 177709 | chr6 | NT_167247.1 | 1550145-1727854 | LOC100421582 | tripartite_motif-containing_protein_26 |