| Enzyme: | SpeI | Longest uncut segments |
| Specificity: | ACTAGT | Repeats in uncut segments |
| Number of sites: | 393191 | Genes in uncut segments |
| Mean distance between sites: | 7277 base pairs | |
| Standard deviation: | 8275 base pairs | |
| Site density | 137.4 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 503029 | chr15 | NT_037852.6 | 1385566-1888595 | 2.25 % in | 31 repeats | 0.00 % in | 0 genes |
| 2 | 414587 | chr6 | NT_167244.1 | 2353278-2767865 | 1.89 % in | 31 repeats | 0.00 % in | 0 genes |
| 3 | 311477 | chr16 | NT_010393.16 | 476195-787672 | 21.65 % in | 355 repeats | 79.92 % in | 31 genes |
| 4 | 255828 | chr6 | NT_167244.1 | 2009129-2264957 | 2.99 % in | 35 repeats | 2.53 % in | 3 genes |
| 5 | 223409 | chr6 | NT_167244.1 | 4381338-4604747 | 4.49 % in | 23 repeats | 1.03 % in | 1 genes |
| 6 | 221770 | chrY | NT_011875.12 | 8429882-8651652 | 77.38 % in | 13 repeats | 0.00 % in | 0 genes |
| 7 | 213243 | chr6 | NT_167249.1 | 2092240-2305483 | 9.71 % in | 90 repeats | 0.00 % in | 0 genes |
| 8 | 207652 | chr6 | NT_167244.1 | 3772075-3979727 | 5.45 % in | 51 repeats | 6.29 % in | 1 genes |
| 9 | 203654 | chr19 | NT_011255.14 | 469641-673295 | 40.42 % in | 426 repeats | 0.00 % in | 0 genes |
| 10 | 193721 | chr1 | NT_004350.19 | 1983631-2177352 | 18.63 % in | 120 repeats | 0.00 % in | 0 genes |
| 11 | 193133 | chr14 | NT_026437.12 | 86092808-86285941 | 29.21 % in | 265 repeats | 0.00 % in | 0 genes |
| 12 | 189943 | chr9 | NT_008470.19 | 61474505-61664448 | 46.49 % in | 463 repeats | 0.00 % in | 0 genes |
| 13 | 188065 | chr7 | NT_007819.17 | 1501464-1689529 | 39.85 % in | 365 repeats | 0.00 % in | 0 genes |
| 14 | 186130 | chr6 | NT_167247.1 | 4415150-4601280 | 3.03 % in | 27 repeats | 0.00 % in | 0 genes |
| 15 | 183595 | chr6 | NT_167247.1 | 1544626-1728221 | 5.19 % in | 49 repeats | 0.00 % in | 0 genes |
| 16 | 181116 | chr1 | NT_004350.19 | 1802515-1983631 | 12.80 % in | 148 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 503029 | chr15 | NT_037852.6 | 1385566-1888595 | 31 | 22 | L1MDa (6) | Tigger2 (3) | L2a (2) | |
| 2 | 414587 | chr6 | NT_167244.1 | 2353278-2767865 | 31 | 21 | L1ME4a (3) | AluY (3) | AluJb (3) | |
| 3 | 311477 | chr16 | NT_010393.16 | 476195-787672 | 355 | 89 | AluSx (39) | AluY (31) | GC_rich (27) | |
| 4 | 255828 | chr6 | NT_167244.1 | 2009129-2264957 | 35 | 24 | MIRb (3) | L1MEe (3) | AluSx (3) | |
| 5 | 223409 | chr6 | NT_167244.1 | 4381338-4604747 | 23 | 15 | MER57-int (3) | HERVH-int (3) | AluSx (3) | |
| 6 | 221770 | chrY | NT_011875.12 | 8429882-8651652 | 13 | 2 | LTR12B (12) | LTR12D (1) | ||
| 7 | 213243 | chr6 | NT_167249.1 | 2092240-2305483 | 90 | 44 | AluSx (10) | AluJb (9) | AluJo (5) | |
| 8 | 207652 | chr6 | NT_167244.1 | 3772075-3979727 | 51 | 33 | L2a (8) | AT_rich (4) | MIR (3) | |
| 9 | 203654 | chr19 | NT_011255.14 | 469641-673295 | 426 | 81 | AluSx (66) | AluY (33) | AluSg (22) | |
| 10 | 193721 | chr1 | NT_004350.19 | 1983631-2177352 | 120 | 59 | AluSx (9) | L1MEg (8) | L1MEf (7) | |
| 11 | 193133 | chr14 | NT_026437.12 | 86092808-86285941 | 265 | 98 | AluSx (27) | GC_rich (11) | AluY (9) | |
| 12 | 189943 | chr9 | NT_008470.19 | 61474505-61664448 | 463 | 94 | AluSx (63) | MIRb (44) | MIR (35) | |
| 13 | 188065 | chr7 | NT_007819.17 | 1501464-1689529 | 365 | 88 | AluSx (41) | AluJo (36) | AluJb (20) | |
| 14 | 186130 | chr6 | NT_167247.1 | 4415150-4601280 | 27 | 22 | AluSx (3) | MLT1J (2) | MIRc (2) | |
| 15 | 183595 | chr6 | NT_167247.1 | 1544626-1728221 | 49 | 29 | MIR3 (5) | MIRc (4) | L2c (4) | |
| 16 | 181116 | chr1 | NT_004350.19 | 1802515-1983631 | 148 | 53 | MIRb (14) | MIR (11) | AluSx (9) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 311477 | chr16 | NT_010393.16 | 476195-787672 | RAB11FIP3 | rab11_family-interacting_protein_3_isoform_2 |
| NCRNA00235 | non-protein_coding_RNA_235 | |||||
| SOLH | calpain-15 | |||||
| C16orf11 | hypothetical_protein_LOC146325 | |||||
| NHLRC4 | NHL-repeat-containing_protein_4 | |||||
| PIGQ | phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_Q_isoform_2 | |||||
| LOC100507068 | ras-related_protein_Rab-40C_isoform_b | |||||
| WFIKKN1 | WAP,_kazal,_immunoglobulin,_kunitz_and_NTR_domain-containing_protein_1_precursor | |||||
| C16orf13 | hypothetical_protein_LOC84326_isoform_d | |||||
| - | tRNA-Gly | |||||
| LOC100287175 | hypothetical_LOC100287175 | |||||
| LOC100130285 | hypothetical_LOC100130285 | |||||
| FAM195A | hypothetical_protein_LOC84331 | |||||
| LOC100507146 | hypothetical_LOC100507146 | |||||
| LOC100507167 | hypothetical_LOC100507167 | |||||
| RHOT2 | mitochondrial_Rho_GTPase_2 | |||||
| RHBDL1 | rhomboid-related_protein_1 | |||||
| STUB1 | E3_ubiquitin-protein_ligase_CHIP | |||||
| JMJD8 | jmjC_domain-containing_protein_8 | |||||
| WDR24 | WD_repeat-containing_protein_24 | |||||
| FBXL16 | F-box/LRR-repeat_protein_16 | |||||
| LOC100287301 | hypothetical_LOC100287301 | |||||
| METRN | meteorin_precursor | |||||
| FAM173A | hypothetical_protein_LOC65990 | |||||
| CCDC78 | coiled-coil_domain-containing_protein_78 | |||||
| HAGHL | hydroxyacylglutathione_hydrolase-like_protein_isoform_1 | |||||
| NARFL | cytosolic_Fe-S_cluster_assembly_factor_NARFL | |||||
| MSLN | mesothelin_isoform_2_preproprotein | |||||
| MIR662 | microRNA:hsa-mir-662 | |||||
| RPUSD1 | RNA_pseudouridylate_synthase_domain-containing_protein_1 | |||||
| CHTF18 | chromosome_transmission_fidelity_protein_18_homolog | |||||
| 4 | 255828 | chr6 | NT_167244.1 | 2009129-2264957 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| MUC21 | mucin-21_precursor | |||||
| 5 | 223409 | chr6 | NT_167244.1 | 4381338-4604747 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |
| 8 | 207652 | chr6 | NT_167244.1 | 3772075-3979727 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |