| Enzyme: | BaeI | Longest uncut segments |
| Specificity: | ACNNNNGTAYC | Repeats in uncut segments |
| Number of sites: | 260650 | Genes in uncut segments |
| Mean distance between sites: | 10977 base pairs | |
| Standard deviation: | 11478 base pairs | |
| Site density | 91.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 512907 | chr15 | NT_037852.6 | 1386842-1899749 | 2.71 % in | 45 repeats | 1.30 % in | 1 genes |
| 2 | 411280 | chr6 | NT_167244.1 | 2352224-2763504 | 1.38 % in | 26 repeats | 0.00 % in | 0 genes |
| 3 | 266875 | chr6 | NT_167244.1 | 1992540-2259415 | 3.99 % in | 53 repeats | 6.44 % in | 4 genes |
| 4 | 237608 | chr12 | NT_029419.12 | 299582-537190 | 99.75 % in | 57 repeats | 0.00 % in | 0 genes |
| 5 | 216185 | chr6 | NT_167247.1 | 4393365-4609550 | 9.00 % in | 60 repeats | 89.84 % in | 4 genes |
| 6 | 210252 | chr6 | NT_167244.1 | 4388316-4598568 | 1.11 % in | 8 repeats | 0.00 % in | 0 genes |
| 7 | 200507 | chr6 | NT_167244.1 | 3771815-3972322 | 3.59 % in | 36 repeats | 6.52 % in | 1 genes |
| 8 | 197407 | chr6 | NT_167244.1 | 3163991-3361398 | 5.58 % in | 63 repeats | 10.86 % in | 2 genes |
| 9 | 196261 | chr6 | NT_167248.1 | 515468-711729 | 10.96 % in | 45 repeats | 0.00 % in | 0 genes |
| 10 | 189932 | chr9 | NT_008470.19 | 21693281-21883213 | 7.04 % in | 58 repeats | 0.00 % in | 0 genes |
| 11 | 189626 | chr6 | NT_167249.1 | 2135619-2325245 | 10.02 % in | 66 repeats | 0.00 % in | 0 genes |
| 12 | 177922 | chr6 | NT_167247.1 | 1562046-1739968 | 5.19 % in | 31 repeats | 0.00 % in | 0 genes |
| 13 | 175541 | chr7 | NT_007933.15 | 68165749-68341290 | 26.64 % in | 121 repeats | 0.00 % in | 0 genes |
| 14 | 175034 | chr11 | NT_009237.18 | 50500225-50675259 | 99.80 % in | 27 repeats | 0.00 % in | 0 genes |
| 15 | 173941 | chr4 | NT_006316.16 | 378800-552741 | 6.29 % in | 68 repeats | 0.00 % in | 0 genes |
| 16 | 164066 | chr2 | NT_022184.15 | 66435939-66600005 | 28.62 % in | 258 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 512907 | chr15 | NT_037852.6 | 1386842-1899749 | 45 | 29 | L1MDa (6) | (TA)n (3) | L2a (3) | |
| 2 | 411280 | chr6 | NT_167244.1 | 2352224-2763504 | 26 | 17 | AluJb (4) | L1ME4a (3) | MLT2D (2) | |
| 3 | 266875 | chr6 | NT_167244.1 | 1992540-2259415 | 53 | 30 | AluSx (7) | L2c (4) | MIRb (3) | |
| 4 | 237608 | chr12 | NT_029419.12 | 299582-537190 | 57 | 13 | ALR/Alpha (32) | L1PA3 (7) | L1PA4 (3) | |
| 5 | 216185 | chr6 | NT_167247.1 | 4393365-4609550 | 60 | 39 | L1PB1 (5) | MIR (3) | L2b (3) | |
| 6 | 210252 | chr6 | NT_167244.1 | 4388316-4598568 | 8 | 7 | MER57-int (2) | (TTCC)n (1) | L1MC (1) | |
| 7 | 200507 | chr6 | NT_167244.1 | 3771815-3972322 | 36 | 26 | AT_rich (4) | MIR (3) | L2a (3) | |
| 8 | 197407 | chr6 | NT_167244.1 | 3163991-3361398 | 63 | 31 | AluSx (9) | L1MC5 (6) | L1MB3 (4) | |
| 9 | 196261 | chr6 | NT_167248.1 | 515468-711729 | 45 | 31 | AT_rich (7) | L2c (3) | L2b (3) | |
| 10 | 189932 | chr9 | NT_008470.19 | 21693281-21883213 | 58 | 44 | L2 (5) | MIR (3) | Tigger1 (2) | |
| 11 | 189626 | chr6 | NT_167249.1 | 2135619-2325245 | 66 | 31 | AluSx (8) | Charlie2b (6) | L2a (4) | |
| 12 | 177922 | chr6 | NT_167247.1 | 1562046-1739968 | 31 | 20 | L1PB2 (4) | L1MEf (3) | MSTB (2) | |
| 13 | 175541 | chr7 | NT_007933.15 | 68165749-68341290 | 121 | 65 | AluSx (7) | L1ME3 (6) | L1M5 (6) | |
| 14 | 175034 | chr11 | NT_009237.18 | 50500225-50675259 | 27 | 7 | ALR/Alpha (13) | L1PA3 (6) | L1PA4 (3) | |
| 15 | 173941 | chr4 | NT_006316.16 | 378800-552741 | 68 | 15 | (CA)n (48) | L1M4 (7) | (TTA)n (1) | |
| 16 | 164066 | chr2 | NT_022184.15 | 66435939-66600005 | 258 | 63 | AluSg/x (30) | (CAAGC)n (25) | (CAGC)n (24) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 512907 | chr15 | NT_037852.6 | 1386842-1899749 | LOC100418897 | |
| 3 | 266875 | chr6 | NT_167244.1 | 1992540-2259415 | MDC1 | mediator_of_DNA_damage_checkpoint_protein_1 |
| LOC100294090 | hypothetical_LOC100294090,_transcript_variant_1 | |||||
| FLOT1 | flotillin-1 | |||||
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| 5 | 216185 | chr6 | NT_167247.1 | 4393365-4609550 | HLA-DPA2 | |
| COL11A2P | ||||||
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| COL11A2 | collagen_alpha-2(XI)_chain_isoform_4_precursor | |||||
| 7 | 200507 | chr6 | NT_167244.1 | 3771815-3972322 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 8 | 197407 | chr6 | NT_167244.1 | 3163991-3361398 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||