| Enzyme: | Eco31I | Longest uncut segments |
| Specificity: | GGTCTC | Repeats in uncut segments |
| Number of sites: | 1648231 | Genes in uncut segments |
| Mean distance between sites: | 1736 base pairs | |
| Standard deviation: | 2130 base pairs | |
| Site density | 576.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 489786 | chr15 | NT_037852.6 | 1397220-1887006 | 0.15 % in | 6 repeats | 0.00 % in | 0 genes |
| 2 | 402806 | chr6 | NT_167244.1 | 2358869-2761675 | 0.20 % in | 3 repeats | 0.00 % in | 0 genes |
| 3 | 211809 | chr6 | NT_167244.1 | 4386081-4597890 | 1.77 % in | 10 repeats | 0.00 % in | 0 genes |
| 4 | 185160 | chr7 | NT_023603.5 | 35411-220571 | 100.00 % in | 6 repeats | 0.00 % in | 0 genes |
| 5 | 182370 | chr6 | NT_167244.1 | 3788652-3971022 | 0.55 % in | 8 repeats | 0.00 % in | 0 genes |
| 6 | 178338 | chr6 | NT_167244.1 | 3178131-3356469 | 0.47 % in | 9 repeats | 1.33 % in | 2 genes |
| 7 | 172762 | chr6 | NT_167247.1 | 4422019-4594781 | 0.31 % in | 2 repeats | 100.00 % in | 1 genes |
| 8 | 171480 | chr6 | NT_167247.1 | 1560377-1731857 | 1.92 % in | 16 repeats | 1.50 % in | 1 genes |
| 9 | 166666 | chr6 | NT_167248.1 | 516687-683353 | 4.41 % in | 3 repeats | 0.00 % in | 0 genes |
| 10 | 165262 | chr6 | NT_167249.1 | 2138272-2303534 | 0.19 % in | 3 repeats | 0.00 % in | 0 genes |
| 11 | 151039 | chr9 | NT_008470.19 | 21692437-21843476 | 0.44 % in | 2 repeats | 0.00 % in | 0 genes |
| 12 | 143664 | chr6 | NT_167244.1 | 2894037-3037701 | 0.36 % in | 5 repeats | 0.00 % in | 0 genes |
| 13 | 118651 | chr6 | NT_167245.1 | 2604973-2723624 | 1.00 % in | 2 repeats | 0.00 % in | 0 genes |
| 14 | 116647 | chr6 | NT_167247.1 | 1175749-1292396 | 1.64 % in | 2 repeats | 0.00 % in | 0 genes |
| 15 | 115429 | chr6 | NT_167246.1 | 3259406-3374835 | 0.26 % in | 3 repeats | 0.00 % in | 0 genes |
| 16 | 112449 | chr6 | NT_025741.15 | 72110812-72223261 | 2.68 % in | 13 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 489786 | chr15 | NT_037852.6 | 1397220-1887006 | 6 | 6 | MLT1L (1) | MIRc (1) | MIRb (1) | |
| 2 | 402806 | chr6 | NT_167244.1 | 2358869-2761675 | 3 | 3 | L4 (1) | AluSp (1) | AluJb (1) | |
| 3 | 211809 | chr6 | NT_167244.1 | 4386081-4597890 | 10 | 7 | MER57-int (3) | AluY (2) | (TTTTA)n (1) | |
| 4 | 185160 | chr7 | NT_023603.5 | 35411-220571 | 6 | 3 | ALR/Alpha (3) | L1PA2 (2) | L1PA3 (1) | |
| 5 | 182370 | chr6 | NT_167244.1 | 3788652-3971022 | 8 | 7 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 6 | 178338 | chr6 | NT_167244.1 | 3178131-3356469 | 9 | 7 | GC_rich (3) | LTR23 (1) | L2a (1) | |
| 7 | 172762 | chr6 | NT_167247.1 | 4422019-4594781 | 2 | 2 | MER11A (1) | AluSc (1) | ||
| 8 | 171480 | chr6 | NT_167247.1 | 1560377-1731857 | 16 | 13 | Tigger7 (2) | MIR (2) | L1MEe (2) | |
| 9 | 166666 | chr6 | NT_167248.1 | 516687-683353 | 3 | 3 | LTR7 (1) | L1PREC2 (1) | HERVH-int (1) | |
| 10 | 165262 | chr6 | NT_167249.1 | 2138272-2303534 | 3 | 3 | L1MB8 (1) | AT_rich (1) | AluSx (1) | |
| 11 | 151039 | chr9 | NT_008470.19 | 21692437-21843476 | 2 | 2 | LTR67B (1) | L1M5 (1) | ||
| 12 | 143664 | chr6 | NT_167244.1 | 2894037-3037701 | 5 | 5 | L1MC5 (1) | AluY (1) | AluSg1 (1) | |
| 13 | 118651 | chr6 | NT_167245.1 | 2604973-2723624 | 2 | 2 | MER5A1 (1) | L2a (1) | ||
| 14 | 116647 | chr6 | NT_167247.1 | 1175749-1292396 | 2 | 1 | ERV3-16A3_I-int (2) | |||
| 15 | 115429 | chr6 | NT_167246.1 | 3259406-3374835 | 3 | 3 | MIRb (1) | MIR3 (1) | AluSx (1) | |
| 16 | 112449 | chr6 | NT_025741.15 | 72110812-72223261 | 13 | 11 | (TG)n (3) | (TTCA)n (1) | (TATG)n (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 6 | 178338 | chr6 | NT_167244.1 | 3178131-3356469 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 172762 | chr6 | NT_167247.1 | 4422019-4594781 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 171480 | chr6 | NT_167247.1 | 1560377-1731857 | LOC100421582 | tripartite_motif-containing_protein_26 |