| Enzyme: | NmeDI | Longest uncut segments |
| Specificity: | RCCGGY | Repeats in uncut segments |
| Number of sites: | 325552 | Genes in uncut segments |
| Mean distance between sites: | 8789 base pairs | |
| Standard deviation: | 13646 base pairs | |
| Site density | 113.8 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 508279 | chr15 | NT_037852.6 | 1396122-1904401 | 1.37 % in | 38 repeats | 1.96 % in | 1 genes |
| 2 | 417263 | chr6 | NT_167244.1 | 2349580-2766843 | 2.20 % in | 40 repeats | 0.00 % in | 0 genes |
| 3 | 235987 | chr8 | NT_008183.19 | 30057396-30293383 | 45.22 % in | 378 repeats | 0.00 % in | 0 genes |
| 4 | 233721 | chr4 | NT_016354.19 | 68026044-68259765 | 54.62 % in | 358 repeats | 100.00 % in | 1 genes |
| 5 | 226810 | chr3 | NT_005612.16 | 81004945-81231755 | 51.64 % in | 375 repeats | 70.32 % in | 1 genes |
| 6 | 225523 | chr9 | NT_008470.19 | 12439274-12664797 | 56.12 % in | 340 repeats | 0.19 % in | 1 genes |
| 7 | 222185 | chr6 | NT_167244.1 | 4376620-4598805 | 3.82 % in | 23 repeats | 3.16 % in | 1 genes |
| 8 | 216418 | chr13 | NT_024524.14 | 45760658-45977076 | 54.13 % in | 344 repeats | 0.00 % in | 0 genes |
| 9 | 212326 | chrX | NT_011786.16 | 8168217-8380543 | 45.36 % in | 330 repeats | 0.00 % in | 0 genes |
| 10 | 212321 | chr2 | NT_005403.17 | 31310680-31523001 | 60.57 % in | 318 repeats | 0.00 % in | 0 genes |
| 11 | 209051 | chr5 | NT_006576.16 | 45915991-46125042 | 94.23 % in | 87 repeats | 0.00 % in | 0 genes |
| 12 | 203967 | chr8 | NT_008046.16 | 18106342-18310309 | 51.71 % in | 322 repeats | 0.00 % in | 0 genes |
| 13 | 201739 | chr7 | NT_023603.5 | 39771-241510 | 99.97 % in | 10 repeats | 0.00 % in | 0 genes |
| 14 | 201049 | chr9 | NT_008413.18 | 13034782-13235831 | 33.77 % in | 313 repeats | 0.00 % in | 0 genes |
| 15 | 197047 | chr6 | NT_167248.1 | 514292-711339 | 11.52 % in | 45 repeats | 0.00 % in | 0 genes |
| 16 | 195782 | chr11 | NT_167190.1 | 34160572-34356354 | 54.08 % in | 361 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 508279 | chr15 | NT_037852.6 | 1396122-1904401 | 38 | 26 | AT_rich (5) | (TA)n (3) | L2a (3) | |
| 2 | 417263 | chr6 | NT_167244.1 | 2349580-2766843 | 40 | 27 | AluJb (4) | L1ME4a (3) | AluY (3) | |
| 3 | 235987 | chr8 | NT_008183.19 | 30057396-30293383 | 378 | 135 | AT_rich (53) | (TA)n (19) | L2a (18) | |
| 4 | 233721 | chr4 | NT_016354.19 | 68026044-68259765 | 358 | 147 | AT_rich (25) | L2c (14) | MIR (13) | |
| 5 | 226810 | chr3 | NT_005612.16 | 81004945-81231755 | 375 | 125 | AT_rich (36) | L2a (21) | MIRb (19) | |
| 6 | 225523 | chr9 | NT_008470.19 | 12439274-12664797 | 340 | 124 | AT_rich (29) | L2a (27) | AluY (10) | |
| 7 | 222185 | chr6 | NT_167244.1 | 4376620-4598805 | 23 | 16 | MER57-int (3) | HUERS-P3-int (3) | AluSx (3) | |
| 8 | 216418 | chr13 | NT_024524.14 | 45760658-45977076 | 344 | 142 | AT_rich (43) | L2a (12) | MIR (9) | |
| 9 | 212326 | chrX | NT_011786.16 | 8168217-8380543 | 330 | 116 | AT_rich (27) | L2c (23) | L2a (22) | |
| 10 | 212321 | chr2 | NT_005403.17 | 31310680-31523001 | 318 | 132 | AT_rich (22) | L2a (15) | MIR (13) | |
| 11 | 209051 | chr5 | NT_006576.16 | 45915991-46125042 | 87 | 29 | ALR/Alpha (29) | AT_rich (8) | L1PA4 (5) | |
| 12 | 203967 | chr8 | NT_008046.16 | 18106342-18310309 | 322 | 115 | AT_rich (45) | AluSx (15) | L1ME2 (13) | |
| 13 | 201739 | chr7 | NT_023603.5 | 39771-241510 | 10 | 4 | ALR/Alpha (6) | L1PA2 (2) | L1PA3 (1) | |
| 14 | 201049 | chr9 | NT_008413.18 | 13034782-13235831 | 313 | 106 | AT_rich (37) | MIRb (20) | MIR (14) | |
| 15 | 197047 | chr6 | NT_167248.1 | 514292-711339 | 45 | 31 | AT_rich (7) | L2c (3) | L2b (3) | |
| 16 | 195782 | chr11 | NT_167190.1 | 34160572-34356354 | 361 | 123 | MIRb (30) | AT_rich (26) | MIR (19) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 508279 | chr15 | NT_037852.6 | 1396122-1904401 | LOC100418897 | |
| 4 | 233721 | chr4 | NT_016354.19 | 68026044-68259765 | LOC100130178 | type_II_inositol-3,4-bisphosphate_4-phosphatase |
| 5 | 226810 | chr3 | NT_005612.16 | 81004945-81231755 | UBE2V1P2 | inactive_N-acetylated-alpha-linked_acidic_dipeptidase-like_protein_2 |
| 6 | 225523 | chr9 | NT_008470.19 | 12439274-12664797 | RPS19P6 | |
| 7 | 222185 | chr6 | NT_167244.1 | 4376620-4598805 | HLA-DPB2 | major_histocompatibility_complex,_class_II,_DP_beta_2_(pseudogene) |