| Enzyme: | ScaI | Longest uncut segments |
| Specificity: | AGTACT | Repeats in uncut segments |
| Number of sites: | 539427 | Genes in uncut segments |
| Mean distance between sites: | 5304 base pairs | |
| Standard deviation: | 5918 base pairs | |
| Site density | 188.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 495420 | chr15 | NT_037852.6 | 1389808-1885228 | 1.27 % in | 17 repeats | 0.00 % in | 0 genes |
| 2 | 412745 | chr6 | NT_167244.1 | 2353828-2766573 | 1.51 % in | 27 repeats | 0.00 % in | 0 genes |
| 3 | 214845 | chr6 | NT_167244.1 | 4388503-4603348 | 2.74 % in | 15 repeats | 0.00 % in | 0 genes |
| 4 | 184792 | chr6 | NT_167247.1 | 4421706-4606498 | 2.59 % in | 24 repeats | 98.21 % in | 2 genes |
| 5 | 184744 | chr6 | NT_167244.1 | 3176319-3361063 | 2.87 % in | 33 repeats | 4.76 % in | 2 genes |
| 6 | 182923 | chr6 | NT_167244.1 | 3787704-3970627 | 0.47 % in | 7 repeats | 0.00 % in | 0 genes |
| 7 | 171958 | chr6 | NT_167249.1 | 4720644-4892602 | 15.31 % in | 142 repeats | 29.25 % in | 6 genes |
| 8 | 171767 | chr6 | NT_167249.1 | 2136520-2308287 | 2.85 % in | 22 repeats | 0.00 % in | 0 genes |
| 9 | 169761 | chr6 | NT_167247.1 | 1561965-1731726 | 1.20 % in | 11 repeats | 0.00 % in | 0 genes |
| 10 | 164216 | chr6 | NT_167248.1 | 518625-682841 | 2.99 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 163742 | chr9 | NT_008470.19 | 21680526-21844268 | 4.78 % in | 27 repeats | 0.00 % in | 0 genes |
| 12 | 162782 | chr4 | NT_006316.16 | 391166-553948 | 3.45 % in | 56 repeats | 0.00 % in | 0 genes |
| 13 | 159184 | chr6 | NT_167244.1 | 2009501-2168685 | 0.75 % in | 5 repeats | 0.00 % in | 0 genes |
| 14 | 147067 | chr6 | NT_167244.1 | 2893991-3041058 | 2.20 % in | 19 repeats | 0.00 % in | 0 genes |
| 15 | 145620 | chr8 | NT_008046.16 | 55594235-55739855 | 25.22 % in | 218 repeats | 0.00 % in | 0 genes |
| 16 | 145264 | chr6 | NT_167245.1 | 115007-260271 | 17.19 % in | 67 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 495420 | chr15 | NT_037852.6 | 1389808-1885228 | 17 | 12 | L1MDa (6) | MIRc (1) | MIRb (1) | |
| 2 | 412745 | chr6 | NT_167244.1 | 2353828-2766573 | 27 | 18 | L1ME4a (3) | AluJb (3) | MLT2D (2) | |
| 3 | 214845 | chr6 | NT_167244.1 | 4388503-4603348 | 15 | 11 | MER57-int (2) | HERVH-int (2) | AluSx (2) | |
| 4 | 184792 | chr6 | NT_167247.1 | 4421706-4606498 | 24 | 18 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 5 | 184744 | chr6 | NT_167244.1 | 3176319-3361063 | 33 | 18 | AluSx (8) | GC_rich (3) | MIRb (2) | |
| 6 | 182923 | chr6 | NT_167244.1 | 3787704-3970627 | 7 | 6 | AT_rich (2) | MLT1H-int (1) | MIR (1) | |
| 7 | 171958 | chr6 | NT_167249.1 | 4720644-4892602 | 142 | 51 | AluSx (16) | AluY (12) | L2a (9) | |
| 8 | 171767 | chr6 | NT_167249.1 | 2136520-2308287 | 22 | 11 | Charlie2b (6) | AluSx (4) | L1MB8 (3) | |
| 9 | 169761 | chr6 | NT_167247.1 | 1561965-1731726 | 11 | 9 | MIR (2) | L1MEe (2) | L1MEf (1) | |
| 10 | 164216 | chr6 | NT_167248.1 | 518625-682841 | 2 | 2 | L1PREC2 (1) | HERVH-int (1) | ||
| 11 | 163742 | chr9 | NT_008470.19 | 21680526-21844268 | 27 | 19 | L1M5 (3) | MLT1G1 (2) | MER5B (2) | |
| 12 | 162782 | chr4 | NT_006316.16 | 391166-553948 | 56 | 4 | (CA)n (47) | L1M4 (7) | MER5B (1) | |
| 13 | 159184 | chr6 | NT_167244.1 | 2009501-2168685 | 5 | 5 | MIR (1) | MER5A1 (1) | L1ME3C (1) | |
| 14 | 147067 | chr6 | NT_167244.1 | 2893991-3041058 | 19 | 9 | L1MC5 (6) | AluSc (3) | L2c (2) | |
| 15 | 145620 | chr8 | NT_008046.16 | 55594235-55739855 | 218 | 61 | MIRb (34) | MIR (27) | L2b (16) | |
| 16 | 145264 | chr6 | NT_167245.1 | 115007-260271 | 67 | 42 | AluY (6) | AluSx (5) | L1MB2 (4) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 184792 | chr6 | NT_167247.1 | 4421706-4606498 | LOC100507722 | hypothetical_protein_LOC100507722 |
| COL11A2 | collagen_alpha-2(XI)_chain_isoform_4_precursor | |||||
| 5 | 184744 | chr6 | NT_167244.1 | 3176319-3361063 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 171958 | chr6 | NT_167249.1 | 4720644-4892602 | RPS18 | 40S_ribosomal_protein_S18 |
| RPL35AP4 | ||||||
| RPL12P1 | kinesin-like_protein_KIFC1 | |||||
| PHF1 | PHD_finger_protein_1_isoform_a | |||||
| CUTA | protein_CutA_isoform_2 | |||||
| SYNGAP1 | ras_GTPase-activating_protein_SynGAP | |||||