| Enzyme: | KpnI | Longest uncut segments |
| Specificity: | GGTACC | Repeats in uncut segments |
| Number of sites: | 286337 | Genes in uncut segments |
| Mean distance between sites: | 9992 base pairs | |
| Standard deviation: | 10869 base pairs | |
| Site density | 100.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 543594 | chr15 | NT_037852.6 | 1394625-1938219 | 3.47 % in | 92 repeats | 2.89 % in | 2 genes |
| 2 | 402911 | chr6 | NT_167244.1 | 2359609-2762520 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 308050 | chrY | NT_011875.12 | 8412710-8720760 | 82.79 % in | 43 repeats | 0.00 % in | 0 genes |
| 4 | 220547 | chr6 | NT_167244.1 | 4387334-4607881 | 5.20 % in | 21 repeats | 0.00 % in | 0 genes |
| 5 | 219797 | chr6 | NT_167247.1 | 4411383-4631180 | 4.59 % in | 50 repeats | 96.01 % in | 3 genes |
| 6 | 201212 | chr6 | NT_167244.1 | 3771832-3973044 | 3.80 % in | 40 repeats | 6.49 % in | 1 genes |
| 7 | 198835 | chr6 | NT_167244.1 | 3157261-3356096 | 4.71 % in | 58 repeats | 11.19 % in | 2 genes |
| 8 | 183005 | chr6 | NT_167248.1 | 520596-703601 | 7.39 % in | 31 repeats | 1.84 % in | 2 genes |
| 9 | 179826 | chr6 | NT_167247.1 | 1555564-1735390 | 5.09 % in | 39 repeats | 0.00 % in | 0 genes |
| 10 | 172726 | chr9 | NT_008470.19 | 21682672-21855398 | 6.42 % in | 38 repeats | 0.00 % in | 0 genes |
| 11 | 171764 | chr7 | NT_033968.6 | 3073842-3245606 | 52.13 % in | 266 repeats | 0.00 % in | 0 genes |
| 12 | 171694 | chr6 | NT_167249.1 | 2135780-2307474 | 3.13 % in | 25 repeats | 0.00 % in | 0 genes |
| 13 | 168216 | chr6 | NT_167244.1 | 2881928-3050144 | 7.73 % in | 65 repeats | 0.00 % in | 0 genes |
| 14 | 161917 | chr6 | NT_167244.1 | 2005224-2167141 | 1.84 % in | 14 repeats | 0.00 % in | 0 genes |
| 15 | 161216 | chr7 | NT_023603.5 | 32972-194188 | 100.00 % in | 4 repeats | 0.00 % in | 0 genes |
| 16 | 152601 | chr8 | NT_008046.16 | 35951832-36104433 | 48.64 % in | 290 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 543594 | chr15 | NT_037852.6 | 1394625-1938219 | 92 | 50 | AT_rich (11) | L2a (6) | L1MC4 (4) | |
| 2 | 402911 | chr6 | NT_167244.1 | 2359609-2762520 | 1 | 1 | AluSp (1) | |||
| 3 | 308050 | chrY | NT_011875.12 | 8412710-8720760 | 43 | 16 | LTR12B (17) | L1PA16 (6) | L1PA7 (3) | |
| 4 | 220547 | chr6 | NT_167244.1 | 4387334-4607881 | 21 | 14 | HERVH-int (4) | AluSx (3) | MER57-int (2) | |
| 5 | 219797 | chr6 | NT_167247.1 | 4411383-4631180 | 50 | 32 | AluSx (5) | MIRc (3) | L2b (3) | |
| 6 | 201212 | chr6 | NT_167244.1 | 3771832-3973044 | 40 | 27 | L2a (5) | AT_rich (4) | MIR (3) | |
| 7 | 198835 | chr6 | NT_167244.1 | 3157261-3356096 | 58 | 32 | L1MC5 (6) | AluSx (5) | L1MB3 (4) | |
| 8 | 183005 | chr6 | NT_167248.1 | 520596-703601 | 31 | 20 | AT_rich (6) | L2b (3) | L1MA9 (3) | |
| 9 | 179826 | chr6 | NT_167247.1 | 1555564-1735390 | 39 | 30 | L2c (3) | Tigger7 (2) | MSTD (2) | |
| 10 | 172726 | chr9 | NT_008470.19 | 21682672-21855398 | 38 | 25 | MIRb (3) | L1M5 (3) | AluSq (3) | |
| 11 | 171764 | chr7 | NT_033968.6 | 3073842-3245606 | 266 | 120 | AT_rich (33) | L2a (9) | L1MCb (8) | |
| 12 | 171694 | chr6 | NT_167249.1 | 2135780-2307474 | 25 | 12 | Charlie2b (6) | AluSx (5) | L1MB8 (3) | |
| 13 | 168216 | chr6 | NT_167244.1 | 2881928-3050144 | 65 | 27 | AluY (7) | L1MC5 (6) | AluSx (5) | |
| 14 | 161917 | chr6 | NT_167244.1 | 2005224-2167141 | 14 | 9 | AluSx (4) | FRAM (2) | AluJb (2) | |
| 15 | 161216 | chr7 | NT_023603.5 | 32972-194188 | 4 | 2 | L1PA2 (3) | ALR/Alpha (1) | ||
| 16 | 152601 | chr8 | NT_008046.16 | 35951832-36104433 | 290 | 97 | MIRb (19) | AluSx (17) | MIR (16) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 543594 | chr15 | NT_037852.6 | 1394625-1938219 | LOC100418897 | |
| LOC646214 | p21_protein_(Cdc42/Rac)-activated_kinase_2_pseudogene | |||||
| 5 | 219797 | chr6 | NT_167247.1 | 4411383-4631180 | COL11A2P | |
| LOC100507722 | hypothetical_protein_LOC100507722 | |||||
| COL11A2 | collagen_alpha-2(XI)_chain_isoform_4_precursor | |||||
| 6 | 201212 | chr6 | NT_167244.1 | 3771832-3973044 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 7 | 198835 | chr6 | NT_167244.1 | 3157261-3356096 | SLC44A4 | choline_transporter-like_protein_4_isoform_3 |
| EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b | |||||
| 8 | 183005 | chr6 | NT_167248.1 | 520596-703601 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||