| Enzyme: | XmnI | Longest uncut segments |
| Specificity: | GAANNNNTTC | Repeats in uncut segments |
| Number of sites: | 991866 | Genes in uncut segments |
| Mean distance between sites: | 2884 base pairs | |
| Standard deviation: | 3093 base pairs | |
| Site density | 346.6 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 493209 | chr15 | NT_037852.6 | 1396782-1889991 | 0.67 % in | 15 repeats | 0.00 % in | 0 genes |
| 2 | 406574 | chr6 | NT_167244.1 | 2359559-2766133 | 0.48 % in | 8 repeats | 0.00 % in | 0 genes |
| 3 | 241256 | chr6 | NT_167244.1 | 3179375-3420631 | 3.43 % in | 36 repeats | 5.52 % in | 2 genes |
| 4 | 213363 | chr6 | NT_167244.1 | 4386752-4600115 | 2.16 % in | 16 repeats | 0.00 % in | 0 genes |
| 5 | 192621 | chr6 | NT_167244.1 | 3780489-3973110 | 2.91 % in | 27 repeats | 3.64 % in | 1 genes |
| 6 | 184051 | chr6 | NT_167247.1 | 4419165-4603216 | 2.90 % in | 28 repeats | 98.76 % in | 1 genes |
| 7 | 166078 | chr6 | NT_167248.1 | 516627-682705 | 4.07 % in | 4 repeats | 0.00 % in | 0 genes |
| 8 | 165899 | chr6 | NT_167247.1 | 1561043-1726942 | 0.62 % in | 3 repeats | 1.15 % in | 1 genes |
| 9 | 165094 | chr6 | NT_167249.1 | 2138167-2303261 | 0.03 % in | 1 repeats | 0.00 % in | 0 genes |
| 10 | 158165 | chr6 | NT_167244.1 | 2007226-2165391 | 0.79 % in | 5 repeats | 0.00 % in | 0 genes |
| 11 | 150354 | chr9 | NT_008470.19 | 21693139-21843493 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 12 | 144386 | chr6 | NT_167244.1 | 2893292-3037678 | 0.42 % in | 5 repeats | 0.00 % in | 0 genes |
| 13 | 124513 | chr6 | NT_167245.1 | 2602392-2726905 | 4.32 % in | 13 repeats | 0.00 % in | 0 genes |
| 14 | 124329 | chrX | NT_011786.16 | 4272338-4396667 | 12.83 % in | 73 repeats | 0.00 % in | 0 genes |
| 15 | 124175 | chr6 | NT_167247.1 | 1170925-1295100 | 4.19 % in | 11 repeats | 0.00 % in | 0 genes |
| 16 | 120496 | chr6 | NT_167244.1 | 1829807-1950303 | 6.72 % in | 32 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 493209 | chr15 | NT_037852.6 | 1396782-1889991 | 15 | 12 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 406574 | chr6 | NT_167244.1 | 2359559-2766133 | 8 | 6 | LTR84b (2) | AluY (2) | MLT1B (1) | |
| 3 | 241256 | chr6 | NT_167244.1 | 3179375-3420631 | 36 | 18 | AluSx (5) | MIR (4) | GC_rich (4) | |
| 4 | 213363 | chr6 | NT_167244.1 | 4386752-4600115 | 16 | 12 | MER57-int (3) | AluSx (3) | (TTTTA)n (1) | |
| 5 | 192621 | chr6 | NT_167244.1 | 3780489-3973110 | 27 | 19 | L2a (5) | MLT1H-int (2) | AT_rich (2) | |
| 6 | 184051 | chr6 | NT_167247.1 | 4419165-4603216 | 28 | 22 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 7 | 166078 | chr6 | NT_167248.1 | 516627-682705 | 4 | 4 | LTR7 (1) | L1PREC2 (1) | L1P4 (1) | |
| 8 | 165899 | chr6 | NT_167247.1 | 1561043-1726942 | 3 | 3 | MIRc (1) | L1MC3 (1) | A-rich (1) | |
| 9 | 165094 | chr6 | NT_167249.1 | 2138167-2303261 | 1 | 1 | AT_rich (1) | |||
| 10 | 158165 | chr6 | NT_167244.1 | 2007226-2165391 | 5 | 4 | AluSx (2) | MIRb (1) | MIR (1) | |
| 11 | 150354 | chr9 | NT_008470.19 | 21693139-21843493 | 1 | 1 | L1M5 (1) | |||
| 12 | 144386 | chr6 | NT_167244.1 | 2893292-3037678 | 5 | 5 | (TCC)n (1) | L1MC5 (1) | AluY (1) | |
| 13 | 124513 | chr6 | NT_167245.1 | 2602392-2726905 | 13 | 10 | Tigger1 (2) | MLT1N2 (2) | L2 (2) | |
| 14 | 124329 | chrX | NT_011786.16 | 4272338-4396667 | 73 | 21 | MER33 (14) | AluSx (14) | AluSc (13) | |
| 15 | 124175 | chr6 | NT_167247.1 | 1170925-1295100 | 11 | 7 | L2 (3) | MIRb (2) | ERV3-16A3_I-int (2) | |
| 16 | 120496 | chr6 | NT_167244.1 | 1829807-1950303 | 32 | 19 | AluSx (5) | L1MC4 (4) | AluJo (3) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 241256 | chr6 | NT_167244.1 | 3179375-3420631 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 5 | 192621 | chr6 | NT_167244.1 | 3780489-3973110 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 184051 | chr6 | NT_167247.1 | 4419165-4603216 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 165899 | chr6 | NT_167247.1 | 1561043-1726942 | LOC100421582 | tripartite_motif-containing_protein_26 |