| Enzyme: | AvrII | Longest uncut segments |
| Specificity: | CCTAGG | Repeats in uncut segments |
| Number of sites: | 590888 | Genes in uncut segments |
| Mean distance between sites: | 4842 base pairs | |
| Standard deviation: | 5176 base pairs | |
| Site density | 206.5 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494796 | chr15 | NT_037852.6 | 1392626-1887422 | 0.80 % in | 14 repeats | 0.00 % in | 0 genes |
| 2 | 405586 | chr6 | NT_167244.1 | 2355931-2761517 | 0.75 % in | 15 repeats | 0.00 % in | 0 genes |
| 3 | 260077 | chr6 | NT_167244.1 | 2009752-2269829 | 3.33 % in | 40 repeats | 3.92 % in | 3 genes |
| 4 | 213509 | chr6 | NT_167244.1 | 4385236-4598745 | 2.13 % in | 14 repeats | 0.00 % in | 0 genes |
| 5 | 201817 | chr6 | NT_167244.1 | 3771610-3973427 | 4.06 % in | 42 repeats | 6.47 % in | 1 genes |
| 6 | 188088 | chr6 | NT_167244.1 | 3168343-3356431 | 3.26 % in | 41 repeats | 6.45 % in | 2 genes |
| 7 | 174903 | chr6 | NT_167247.1 | 4421407-4596310 | 1.05 % in | 7 repeats | 100.00 % in | 1 genes |
| 8 | 172847 | chr6 | NT_167248.1 | 512797-685644 | 7.50 % in | 7 repeats | 0.00 % in | 0 genes |
| 9 | 168555 | chr6 | NT_167249.1 | 2135189-2303744 | 1.52 % in | 13 repeats | 0.00 % in | 0 genes |
| 10 | 167715 | chr6 | NT_167247.1 | 1561566-1729281 | 0.98 % in | 8 repeats | 0.00 % in | 0 genes |
| 11 | 167512 | chrY | NT_011875.12 | 8551242-8718754 | 70.02 % in | 20 repeats | 0.00 % in | 0 genes |
| 12 | 161221 | chr7 | NT_023603.5 | 33331-194552 | 100.00 % in | 3 repeats | 0.00 % in | 0 genes |
| 13 | 159595 | chr9 | NT_008470.19 | 21686894-21846489 | 3.52 % in | 17 repeats | 0.00 % in | 0 genes |
| 14 | 147724 | chr6 | NT_167244.1 | 2894517-3042241 | 2.02 % in | 18 repeats | 0.00 % in | 0 genes |
| 15 | 134197 | chr9 | NT_078070.3 | 952067-1086264 | 59.23 % in | 32 repeats | 0.00 % in | 0 genes |
| 16 | 133711 | chr6 | NT_167245.1 | 130431-264142 | 10.27 % in | 55 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494796 | chr15 | NT_037852.6 | 1392626-1887422 | 14 | 12 | L1MDa (3) | MLT1L (1) | MIRc (1) | |
| 2 | 405586 | chr6 | NT_167244.1 | 2355931-2761517 | 15 | 10 | AluJb (3) | MLT2D (2) | L4 (2) | |
| 3 | 260077 | chr6 | NT_167244.1 | 2009752-2269829 | 40 | 28 | MIR (4) | L1MEe (3) | AluSx (3) | |
| 4 | 213509 | chr6 | NT_167244.1 | 4385236-4598745 | 14 | 9 | MER57-int (3) | AluSx (3) | AluY (2) | |
| 5 | 201817 | chr6 | NT_167244.1 | 3771610-3973427 | 42 | 29 | L2a (5) | AT_rich (4) | MIR (3) | |
| 6 | 188088 | chr6 | NT_167244.1 | 3168343-3356431 | 41 | 21 | L1MC5 (6) | AluSx (5) | L1MB3 (4) | |
| 7 | 174903 | chr6 | NT_167247.1 | 4421407-4596310 | 7 | 7 | (TTAAA)n (1) | MLT1J (1) | MIR (1) | |
| 8 | 172847 | chr6 | NT_167248.1 | 512797-685644 | 7 | 7 | LTR7 (1) | L1PREC2 (1) | L1PA7 (1) | |
| 9 | 168555 | chr6 | NT_167249.1 | 2135189-2303744 | 13 | 8 | AluSx (3) | MLT1A (2) | L1MB8 (2) | |
| 10 | 167715 | chr6 | NT_167247.1 | 1561566-1729281 | 8 | 6 | MIR (2) | L1MEe (2) | L1MC3 (1) | |
| 11 | 167512 | chrY | NT_011875.12 | 8551242-8718754 | 20 | 9 | LTR12B (9) | L1PA16 (4) | (TATAA)n (1) | |
| 12 | 161221 | chr7 | NT_023603.5 | 33331-194552 | 3 | 2 | L1PA2 (2) | ALR/Alpha (1) | ||
| 13 | 159595 | chr9 | NT_008470.19 | 21686894-21846489 | 17 | 11 | MER5B (2) | LTR67B (2) | L2 (2) | |
| 14 | 147724 | chr6 | NT_167244.1 | 2894517-3042241 | 18 | 9 | L1MC5 (6) | L2c (2) | AluY (2) | |
| 15 | 134197 | chr9 | NT_078070.3 | 952067-1086264 | 32 | 14 | ERVL-E-int (5) | (TAA)n (3) | L1PA3 (3) | |
| 16 | 133711 | chr6 | NT_167245.1 | 130431-264142 | 55 | 39 | AluSx (6) | L1MC5 (4) | AluY (4) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 3 | 260077 | chr6 | NT_167244.1 | 2009752-2269829 | FLOT1 | flotillin-1 |
| DDR1 | epithelial_discoidin_domain-containing_receptor_1_isoform_DDR1c | |||||
| MUC21 | mucin-21_precursor | |||||
| 5 | 201817 | chr6 | NT_167244.1 | 3771610-3973427 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 6 | 188088 | chr6 | NT_167244.1 | 3168343-3356431 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 7 | 174903 | chr6 | NT_167247.1 | 4421407-4596310 | LOC100507722 | hypothetical_protein_LOC100507722 |