| Enzyme: | McaTI | Longest uncut segments |
| Specificity: | GCGCGC | Repeats in uncut segments |
| Number of sites: | 71745 | Genes in uncut segments |
| Mean distance between sites: | 39882 base pairs | |
| Standard deviation: | 94447 base pairs | |
| Site density | 25.1 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 1938705 | chrX | NT_167197.1 | 2087213-4025918 | 46.25 % in | 3821 repeats | 17.44 % in | 2 genes |
| 2 | 1770775 | chr3 | NT_005612.16 | 9561611-11332386 | 54.57 % in | 2802 repeats | 3.54 % in | 4 genes |
| 3 | 1641612 | chr13 | NT_024524.14 | 51776684-53418296 | 40.51 % in | 2532 repeats | 26.06 % in | 3 genes |
| 4 | 1610650 | chrY | NT_011875.12 | 3769457-5380107 | 60.45 % in | 2751 repeats | 0.05 % in | 1 genes |
| 5 | 1480588 | chr10 | NT_030059.13 | 8925734-10406322 | 54.93 % in | 2314 repeats | 0.00 % in | 0 genes |
| 6 | 1428704 | chrX | NT_011651.17 | 4625513-6054217 | 80.10 % in | 2042 repeats | 0.05 % in | 2 genes |
| 7 | 1427476 | chr5 | NT_034772.6 | 28299651-29727127 | 53.42 % in | 2146 repeats | 8.44 % in | 7 genes |
| 8 | 1409299 | chr8 | NT_167187.1 | 21401308-22810607 | 54.57 % in | 2420 repeats | 0.31 % in | 5 genes |
| 9 | 1370949 | chrX | NT_011630.14 | 4144130-5515079 | 82.80 % in | 1557 repeats | 0.00 % in | 0 genes |
| 10 | 1356560 | chr2 | NT_005403.17 | 5964039-7320599 | 51.48 % in | 2019 repeats | 0.00 % in | 0 genes |
| 11 | 1350344 | chrY | NT_011903.12 | 1049812-2400156 | 57.53 % in | 1932 repeats | 0.00 % in | 0 genes |
| 12 | 1347643 | chr13 | NT_024524.14 | 35006520-36354163 | 49.16 % in | 2071 repeats | 0.00 % in | 0 genes |
| 13 | 1328717 | chrX | NT_011651.17 | 35258296-36587013 | 65.00 % in | 2289 repeats | 0.00 % in | 0 genes |
| 14 | 1327596 | chr2 | NT_022135.16 | 31309565-32637161 | 36.90 % in | 1974 repeats | 0.00 % in | 0 genes |
| 15 | 1311542 | chr4 | NT_006238.11 | 2361750-3673292 | 56.55 % in | 2131 repeats | 0.00 % in | 0 genes |
| 16 | 1299812 | chr10 | NT_030059.13 | 58114864-59414676 | 47.27 % in | 2175 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 1938705 | chrX | NT_167197.1 | 2087213-4025918 | 3821 | 454 | AT_rich (302) | AluSx (192) | AluJo (189) | |
| 2 | 1770775 | chr3 | NT_005612.16 | 9561611-11332386 | 2802 | 431 | AT_rich (337) | L2a (72) | AluSx (68) | |
| 3 | 1641612 | chr13 | NT_024524.14 | 51776684-53418296 | 2532 | 400 | AT_rich (339) | MIR (83) | MIRb (82) | |
| 4 | 1610650 | chrY | NT_011875.12 | 3769457-5380107 | 2751 | 403 | AT_rich (206) | AluSx (118) | AluJo (106) | |
| 5 | 1480588 | chr10 | NT_030059.13 | 8925734-10406322 | 2314 | 415 | AT_rich (240) | MIR (87) | MIRb (84) | |
| 6 | 1428704 | chrX | NT_011651.17 | 4625513-6054217 | 2042 | 361 | AT_rich (110) | AluSx (48) | L1PA15 (45) | |
| 7 | 1427476 | chr5 | NT_034772.6 | 28299651-29727127 | 2146 | 384 | AT_rich (219) | L2a (58) | MIR (52) | |
| 8 | 1409299 | chr8 | NT_167187.1 | 21401308-22810607 | 2420 | 406 | AT_rich (136) | AluSx (108) | L2a (101) | |
| 9 | 1370949 | chrX | NT_011630.14 | 4144130-5515079 | 1557 | 323 | AT_rich (58) | AluSx (47) | L1MA2 (41) | |
| 10 | 1356560 | chr2 | NT_005403.17 | 5964039-7320599 | 2019 | 357 | AT_rich (259) | MIR (62) | L2a (61) | |
| 11 | 1350344 | chrY | NT_011903.12 | 1049812-2400156 | 1932 | 281 | BSR/Beta (173) | AT_rich (112) | AluSx (82) | |
| 12 | 1347643 | chr13 | NT_024524.14 | 35006520-36354163 | 2071 | 386 | AT_rich (209) | MIRb (81) | MIR (72) | |
| 13 | 1328717 | chrX | NT_011651.17 | 35258296-36587013 | 2289 | 394 | AT_rich (115) | AluSx (106) | L2c (77) | |
| 14 | 1327596 | chr2 | NT_022135.16 | 31309565-32637161 | 1974 | 349 | AT_rich (255) | MIRb (92) | L2a (73) | |
| 15 | 1311542 | chr4 | NT_006238.11 | 2361750-3673292 | 2131 | 390 | AT_rich (187) | MIR (92) | L2a (85) | |
| 16 | 1299812 | chr10 | NT_030059.13 | 58114864-59414676 | 2175 | 367 | AT_rich (134) | MIR (113) | MIRb (111) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 1938705 | chrX | NT_167197.1 | 2087213-4025918 | LOC100287928 | |
| NLGN4X | neuroligin-4,_X-linked_precursor | |||||
| 2 | 1770775 | chr3 | NT_005612.16 | 9561611-11332386 | LOC644681 | |
| LOC100128179 | ||||||
| TRNAE27P | ||||||
| LOC391562 | ||||||
| 3 | 1641612 | chr13 | NT_024524.14 | 51776684-53418296 | LOC100288130 | uncharacterized_protein_KIAA0802-like |
| LOC100421226 | ||||||
| RPL35AP31 | dachshund_homolog_1_isoform_c | |||||
| 4 | 1610650 | chrY | NT_011875.12 | 3769457-5380107 | STSP1 | |
| 6 | 1428704 | chrX | NT_011651.17 | 4625513-6054217 | RPL22P22 | |
| LOC266683 | ||||||
| 7 | 1427476 | chr5 | NT_034772.6 | 28299651-29727127 | PRR16 | proline-rich_protein_16 |
| RPL23AP44 | ||||||
| RPL18P3 | ||||||
| RSL24D1P10 | ||||||
| FTMT | ferritin,_mitochondrial_precursor | |||||
| SRFBP1 | serum_response_factor-binding_protein_1 | |||||
| LOX | protein-lysine_6-oxidase_isoform_2 | |||||
| 8 | 1409299 | chr8 | NT_167187.1 | 21401308-22810607 | VENTXP5 | |
| RPL6P22 | ||||||
| CYCSP3 | ||||||
| RPL10AP3 | ||||||
| RPL21P80 | ||||||