| Enzyme: | SdeOSI | Longest uncut segments |
| Specificity: | GACNNNNRTGA | Repeats in uncut segments |
| Number of sites: | 563799 | Genes in uncut segments |
| Mean distance between sites: | 5075 base pairs | |
| Standard deviation: | 5131 base pairs | |
| Site density | 197.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 499853 | chr15 | NT_037852.6 | 1393849-1893702 | 1.29 % in | 27 repeats | 0.12 % in | 1 genes |
| 2 | 413758 | chr6 | NT_167244.1 | 2359441-2773199 | 1.20 % in | 22 repeats | 0.00 % in | 0 genes |
| 3 | 214600 | chr6 | NT_167244.1 | 4387503-4602103 | 2.63 % in | 15 repeats | 0.00 % in | 0 genes |
| 4 | 191838 | chr6 | NT_167244.1 | 3164570-3356408 | 3.92 % in | 50 repeats | 8.28 % in | 2 genes |
| 5 | 187834 | chr6 | NT_167246.1 | 3050900-3238734 | 14.82 % in | 116 repeats | 6.12 % in | 3 genes |
| 6 | 183579 | chr6 | NT_167244.1 | 3789845-3973424 | 1.36 % in | 13 repeats | 0.00 % in | 0 genes |
| 7 | 180030 | chr6 | NT_167247.1 | 4419325-4599355 | 2.38 % in | 21 repeats | 100.00 % in | 1 genes |
| 8 | 179491 | chr6 | NT_167248.1 | 519108-698599 | 7.40 % in | 21 repeats | 1.76 % in | 2 genes |
| 9 | 171801 | chr6 | NT_167247.1 | 1558847-1730648 | 2.36 % in | 19 repeats | 0.00 % in | 0 genes |
| 10 | 167930 | chr6 | NT_167249.1 | 2136453-2304383 | 1.32 % in | 11 repeats | 0.00 % in | 0 genes |
| 11 | 164288 | chr7 | NT_023603.5 | 31900-196188 | 100.00 % in | 5 repeats | 0.00 % in | 0 genes |
| 12 | 160290 | chr9 | NT_008470.19 | 21684835-21845125 | 4.05 % in | 20 repeats | 0.00 % in | 0 genes |
| 13 | 150230 | chr6 | NT_167244.1 | 2893314-3043544 | 2.22 % in | 21 repeats | 0.00 % in | 0 genes |
| 14 | 138076 | chr6 | NT_167247.1 | 1169024-1307100 | 9.47 % in | 35 repeats | 0.00 % in | 0 genes |
| 15 | 121946 | chr6 | NT_167245.1 | 128006-249952 | 6.67 % in | 26 repeats | 0.00 % in | 0 genes |
| 16 | 120924 | chr6 | NT_167245.1 | 2604240-2725164 | 2.45 % in | 7 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 499853 | chr15 | NT_037852.6 | 1393849-1893702 | 27 | 20 | L2a (3) | L1MDa (3) | MER44C (2) | |
| 2 | 413758 | chr6 | NT_167244.1 | 2359441-2773199 | 22 | 16 | AluY (3) | LTR84b (2) | L2b (2) | |
| 3 | 214600 | chr6 | NT_167244.1 | 4387503-4602103 | 15 | 11 | MER57-int (2) | HERVH-int (2) | AluSx (2) | |
| 4 | 191838 | chr6 | NT_167244.1 | 3164570-3356408 | 50 | 29 | L1MC5 (6) | AluSx (5) | L1MB3 (4) | |
| 5 | 187834 | chr6 | NT_167246.1 | 3050900-3238734 | 116 | 46 | AluSx (18) | AluY (12) | AluJb (7) | |
| 6 | 183579 | chr6 | NT_167244.1 | 3789845-3973424 | 13 | 11 | MLT1H-int (2) | L2a (2) | (TA)n (1) | |
| 7 | 180030 | chr6 | NT_167247.1 | 4419325-4599355 | 21 | 17 | AluSx (3) | MLT1J (2) | L1MC5 (2) | |
| 8 | 179491 | chr6 | NT_167248.1 | 519108-698599 | 21 | 14 | AT_rich (5) | L1MA9 (3) | L1MC5 (2) | |
| 9 | 171801 | chr6 | NT_167247.1 | 1558847-1730648 | 19 | 15 | Tigger7 (2) | MSTD (2) | MIR (2) | |
| 10 | 167930 | chr6 | NT_167249.1 | 2136453-2304383 | 11 | 7 | L1MB8 (3) | AluSx (3) | MLT1A (1) | |
| 11 | 164288 | chr7 | NT_023603.5 | 31900-196188 | 5 | 2 | L1PA2 (4) | ALR/Alpha (1) | ||
| 12 | 160290 | chr9 | NT_008470.19 | 21684835-21845125 | 20 | 13 | L1M5 (3) | MER5B (2) | LTR67B (2) | |
| 13 | 150230 | chr6 | NT_167244.1 | 2893314-3043544 | 21 | 10 | L1MC5 (6) | L2c (3) | AluSc (3) | |
| 14 | 138076 | chr6 | NT_167247.1 | 1169024-1307100 | 35 | 22 | ERV3-16A3_I-int (5) | L2 (4) | L2a (3) | |
| 15 | 121946 | chr6 | NT_167245.1 | 128006-249952 | 26 | 23 | MER57A1 (2) | L2c (2) | AluSx (2) | |
| 16 | 120924 | chr6 | NT_167245.1 | 2604240-2725164 | 7 | 6 | L2 (2) | MLT1N2 (1) | MLT1E2 (1) | |
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 1 | 499853 | chr15 | NT_037852.6 | 1393849-1893702 | LOC100418897 | |
| 4 | 191838 | chr6 | NT_167244.1 | 3164570-3356408 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||
| 5 | 187834 | chr6 | NT_167246.1 | 3050900-3238734 | MSH5 | mutS_protein_homolog_5_isoform_c |
| NEU1 | sialidase-1_precursor | |||||
| C2 | complement_C2_isoform_3 | |||||
| 7 | 180030 | chr6 | NT_167247.1 | 4419325-4599355 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 8 | 179491 | chr6 | NT_167248.1 | 519108-698599 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||