| Enzyme: | NgoBI | Longest uncut segments |
| Specificity: | RGCGCY | Repeats in uncut segments |
| Number of sites: | 549280 | Genes in uncut segments |
| Mean distance between sites: | 5209 base pairs | |
| Standard deviation: | 8358 base pairs | |
| Site density | 192.0 per megabase | Help |
| Distribution of closely spaced sites |
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| Distribution of sites within 7 STD distance |
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| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 494438 | chr15 | NT_037852.6 | 1397157-1891595 | 0.82 % in | 18 repeats | 0.00 % in | 0 genes |
| 2 | 406639 | chr6 | NT_167244.1 | 2357670-2764309 | 0.56 % in | 10 repeats | 0.00 % in | 0 genes |
| 3 | 221084 | chr6 | NT_167244.1 | 4387607-4608691 | 5.43 % in | 24 repeats | 0.00 % in | 0 genes |
| 4 | 196641 | chr6 | NT_167244.1 | 3774540-3971181 | 2.59 % in | 24 repeats | 6.59 % in | 1 genes |
| 5 | 195479 | chr6 | NT_007299.13 | 235208-430687 | 57.67 % in | 147 repeats | 0.27 % in | 1 genes |
| 6 | 195107 | chr6 | NT_167248.1 | 504585-699692 | 13.88 % in | 42 repeats | 1.72 % in | 2 genes |
| 7 | 186270 | chr6 | NT_167247.1 | 1550691-1736961 | 7.41 % in | 58 repeats | 6.58 % in | 1 genes |
| 8 | 177083 | chr6 | NT_167244.1 | 3179938-3357021 | 0.41 % in | 6 repeats | 0.63 % in | 2 genes |
| 9 | 176686 | chr6 | NT_167247.1 | 4421805-4598491 | 1.74 % in | 12 repeats | 0.00 % in | 0 genes |
| 10 | 175938 | chr6 | NT_167249.1 | 2129852-2305790 | 4.44 % in | 33 repeats | 0.00 % in | 0 genes |
| 11 | 173815 | chrY | NT_011875.12 | 8482774-8656589 | 71.16 % in | 9 repeats | 0.00 % in | 0 genes |
| 12 | 169638 | chr4 | NT_167250.1 | 315222-484860 | 67.55 % in | 273 repeats | 0.00 % in | 0 genes |
| 13 | 169607 | chr4 | NT_022778.16 | 9813669-9983276 | 67.59 % in | 269 repeats | 0.00 % in | 0 genes |
| 14 | 160322 | chr9 | NT_008470.19 | 21684459-21844781 | 4.22 % in | 22 repeats | 0.00 % in | 0 genes |
| 15 | 159808 | chr7 | NT_077528.2 | 300515-460323 | 26.09 % in | 193 repeats | 0.00 % in | 0 genes |
| 16 | 155593 | chr6 | NT_167244.1 | 2009060-2164653 | 0.07 % in | 1 repeats | 0.00 % in | 0 genes |
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| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 494438 | chr15 | NT_037852.6 | 1397157-1891595 | 18 | 15 | L2a (3) | L1M5 (2) | U2 (1) | |
| 2 | 406639 | chr6 | NT_167244.1 | 2357670-2764309 | 10 | 8 | L4 (2) | AluJb (2) | L1MEg (1) | |
| 3 | 221084 | chr6 | NT_167244.1 | 4387607-4608691 | 24 | 14 | HERVH-int (4) | AluSx (4) | MER57-int (2) | |
| 4 | 196641 | chr6 | NT_167244.1 | 3774540-3971181 | 24 | 16 | MIR (3) | L2a (3) | AT_rich (3) | |
| 5 | 195479 | chr6 | NT_007299.13 | 235208-430687 | 147 | 80 | ALR/Alpha (16) | LTR49-int (12) | AT_rich (6) | |
| 6 | 195107 | chr6 | NT_167248.1 | 504585-699692 | 42 | 32 | AT_rich (5) | L1MA9 (3) | MER4D (2) | |
| 7 | 186270 | chr6 | NT_167247.1 | 1550691-1736961 | 58 | 37 | L1PB2 (4) | MIRc (3) | MIR3 (3) | |
| 8 | 177083 | chr6 | NT_167244.1 | 3179938-3357021 | 6 | 5 | GC_rich (2) | Charlie4a (1) | (CCG)n (1) | |
| 9 | 176686 | chr6 | NT_167247.1 | 4421805-4598491 | 12 | 9 | AluSx (3) | MLT1J (2) | (TTAAA)n (1) | |
| 10 | 175938 | chr6 | NT_167249.1 | 2129852-2305790 | 33 | 18 | AluSx (5) | MamGypLTR1b (3) | L1MB8 (3) | |
| 11 | 173815 | chrY | NT_011875.12 | 8482774-8656589 | 9 | 2 | LTR12B (8) | LTR12D (1) | ||
| 12 | 169638 | chr4 | NT_167250.1 | 315222-484860 | 273 | 108 | AT_rich (29) | L1MB2 (14) | L1M4b (8) | |
| 13 | 169607 | chr4 | NT_022778.16 | 9813669-9983276 | 269 | 106 | AT_rich (26) | L1MB2 (13) | L1M4b (8) | |
| 14 | 160322 | chr9 | NT_008470.19 | 21684459-21844781 | 22 | 15 | L1M5 (3) | MER5B (2) | LTR67B (2) | |
| 15 | 159808 | chr7 | NT_077528.2 | 300515-460323 | 193 | 47 | (GAATG)n (20) | AT_rich (20) | (CGAAT)n (18) | |
| 16 | 155593 | chr6 | NT_167244.1 | 2009060-2164653 | 1 | 1 | MIRb (1) | |||
| Help | ||||||
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| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 4 | 196641 | chr6 | NT_167244.1 | 3774540-3971181 | HLA-DRB3 | major_histocompatibility_complex,_class_II,_DR_beta_3_precursor |
| 5 | 195479 | chr6 | NT_007299.13 | 235208-430687 | MTRNR2L9 | MTRNR2-like_9 |
| 6 | 195107 | chr6 | NT_167248.1 | 504585-699692 | OR12D1P | |
| OR11A1 | olfactory_receptor_11A1 | |||||
| 7 | 186270 | chr6 | NT_167247.1 | 1550691-1736961 | LOC100421582 | tripartite_motif-containing_protein_26 |
| 8 | 177083 | chr6 | NT_167244.1 | 3179938-3357021 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| TNXB | tenascin-X_isoform_1_precursor | |||||