| Enzyme: | MmeI | Longest uncut segments |
| Specificity: | TCCRAC | Repeats in uncut segments |
| Number of sites: | 1272589 | Genes in uncut segments |
| Mean distance between sites: | 2248 base pairs | |
| Standard deviation: | 2333 base pairs | |
| Site density | 444.8 per megabase | Help |
| Distribution of closely spaced sites |
|---|
|
| Distribution of sites within 7 STD distance |
|
| Help | ||||||||
|---|---|---|---|---|---|---|---|---|
| Longest uncut segments | ||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeat content | Gene content | ||
| 1 | 490219 | chr15 | NT_037852.6 | 1396252-1886471 | 0.24 % in | 7 repeats | 0.00 % in | 0 genes |
| 2 | 402996 | chr6 | NT_167244.1 | 2359470-2762466 | 0.08 % in | 1 repeats | 0.00 % in | 0 genes |
| 3 | 209703 | chr6 | NT_167244.1 | 4389871-4599574 | 0.67 % in | 7 repeats | 0.00 % in | 0 genes |
| 4 | 184983 | chr6 | NT_167244.1 | 3787590-3972573 | 1.28 % in | 13 repeats | 0.00 % in | 0 genes |
| 5 | 180791 | chr6 | NT_167244.1 | 3175092-3355883 | 1.71 % in | 25 repeats | 2.84 % in | 1 genes |
| 6 | 176807 | chr6 | NT_167247.1 | 4418718-4595525 | 1.14 % in | 8 repeats | 100.00 % in | 1 genes |
| 7 | 171030 | chr6 | NT_167248.1 | 520432-691462 | 4.08 % in | 9 repeats | 0.66 % in | 1 genes |
| 8 | 168304 | chr6 | NT_167249.1 | 2136588-2304892 | 1.37 % in | 11 repeats | 0.00 % in | 0 genes |
| 9 | 167466 | chr6 | NT_167247.1 | 1561130-1728596 | 1.06 % in | 8 repeats | 0.00 % in | 0 genes |
| 10 | 150742 | chr9 | NT_008470.19 | 21693119-21843861 | 0.14 % in | 2 repeats | 0.00 % in | 0 genes |
| 11 | 149624 | chr6 | NT_167244.1 | 2892507-3042131 | 2.71 % in | 22 repeats | 0.00 % in | 0 genes |
| 12 | 147777 | chrY | NT_011875.12 | 8490692-8638469 | 66.10 % in | 7 repeats | 0.00 % in | 0 genes |
| 13 | 122318 | chr6 | NT_167245.1 | 2603795-2726113 | 3.12 % in | 9 repeats | 0.00 % in | 0 genes |
| 14 | 118118 | chr6 | NT_167247.1 | 1174854-1292972 | 2.37 % in | 4 repeats | 0.00 % in | 0 genes |
| 15 | 117680 | chr6 | NT_167246.1 | 3257955-3375635 | 0.55 % in | 4 repeats | 0.00 % in | 0 genes |
| 16 | 110128 | chr6 | NT_167245.1 | 135872-246000 | 1.83 % in | 4 repeats | 0.00 % in | 0 genes |
| Help | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Repeats in longest uncut segments | ||||||||||
| # | Length | Chr | Scaffold | Coordinates | Repeats | |||||
| Total | Distinct | Most | Second | Third | ||||||
| 1 | 490219 | chr15 | NT_037852.6 | 1396252-1886471 | 7 | 7 | MIRc (1) | MIRb (1) | L1M3 (1) | |
| 2 | 402996 | chr6 | NT_167244.1 | 2359470-2762466 | 1 | 1 | AluSp (1) | |||
| 3 | 209703 | chr6 | NT_167244.1 | 4389871-4599574 | 7 | 6 | AluSx (2) | L1PA15 (1) | L1ME3D (1) | |
| 4 | 184983 | chr6 | NT_167244.1 | 3787590-3972573 | 13 | 11 | MLT1H-int (2) | AT_rich (2) | MLT1H (1) | |
| 5 | 180791 | chr6 | NT_167244.1 | 3175092-3355883 | 25 | 15 | L1MB3 (4) | AluSx (4) | GC_rich (3) | |
| 6 | 176807 | chr6 | NT_167247.1 | 4418718-4595525 | 8 | 8 | MIRb (1) | MIR (1) | MER11A (1) | |
| 7 | 171030 | chr6 | NT_167248.1 | 520432-691462 | 9 | 6 | AT_rich (4) | MLT1G3 (1) | L1PREC2 (1) | |
| 8 | 168304 | chr6 | NT_167249.1 | 2136588-2304892 | 11 | 7 | L1MB8 (3) | AluSx (3) | MamGypLTR1b (1) | |
| 9 | 167466 | chr6 | NT_167247.1 | 1561130-1728596 | 8 | 7 | MIR (2) | MIRc (1) | L1MEe (1) | |
| 10 | 150742 | chr9 | NT_008470.19 | 21693119-21843861 | 2 | 2 | MIR3 (1) | L1M5 (1) | ||
| 11 | 149624 | chr6 | NT_167244.1 | 2892507-3042131 | 22 | 11 | L1MC5 (6) | AluY (3) | AluSc (3) | |
| 12 | 147777 | chrY | NT_011875.12 | 8490692-8638469 | 7 | 2 | LTR12B (6) | LTR12D (1) | ||
| 13 | 122318 | chr6 | NT_167245.1 | 2603795-2726113 | 9 | 8 | L2 (2) | MLT1N2 (1) | MLT1E2 (1) | |
| 14 | 118118 | chr6 | NT_167247.1 | 1174854-1292972 | 4 | 3 | ERV3-16A3_I-int (2) | LTR16B2 (1) | L2 (1) | |
| 15 | 117680 | chr6 | NT_167246.1 | 3257955-3375635 | 4 | 3 | MIRb (2) | MIR3 (1) | AluSx (1) | |
| 16 | 110128 | chr6 | NT_167245.1 | 135872-246000 | 4 | 4 | MLT1E2 (1) | MER6 (1) | MER39 (1) | |
| Help | ||||||
|---|---|---|---|---|---|---|
| Genes in longest uncut segments | ||||||
| Sgmnt | Length (bp) | Chr | Scaffold | Coordinates | Gene symbol | Gene function |
| 5 | 180791 | chr6 | NT_167244.1 | 3175092-3355883 | EHMT2 | histone-lysine_N-methyltransferase,_H3_lysine-9_specific_3_isoform_b |
| 6 | 176807 | chr6 | NT_167247.1 | 4418718-4595525 | LOC100507722 | hypothetical_protein_LOC100507722 |
| 7 | 171030 | chr6 | NT_167248.1 | 520432-691462 | OR12D1P | |